Evidence map›Paper›PMID 39012827›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

GIGANTEA adjusts the response to shade at dusk by directly impinging on PHYTOCHROME INTERACTING FACTOR 7 function.

Carlos Martínez-Vasallo, Benjamin Cole, Jaime Pérez-Alemany, Clara I Ortiz-Ramírez, Javier Gallego-Bartolomé, Joanne Chory, Steve A Kay, Maria A Nohales

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Genes · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Carlos Martínez-VasalloInstituto de Biologίa Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientίficas-Universidad Politécnica de Valencia, Valencia 46022, Spain.ORCID 0009-0002-0316-1507
Benjamin ColeDepartment of Neurology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089.ORCID 0000-0001-9652-624X
Jaime Pérez-AlemanyInstituto de Biologίa Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientίficas-Universidad Politécnica de Valencia, Valencia 46022, Spain.ORCID 0009-0004-2298-5004
Clara I Ortiz-RamírezInstituto de Biologίa Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientίficas-Universidad Politécnica de Valencia, Valencia 46022, Spain.ORCID 0009-0001-1687-5851
Javier Gallego-BartoloméInstituto de Biologίa Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientίficas-Universidad Politécnica de Valencia, Valencia 46022, Spain.ORCID 0000-0003-2225-7168
Joanne ChoryPlant Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037.
Steve A KayDepartment of Neurology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089.ORCID 0000-0002-0402-2878
Maria A NohalesInstituto de Biologίa Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientίficas-Universidad Politécnica de Valencia, Valencia 46022, Spain.ORCID 0000-0002-7874-4021

Funding

Molecular Mechanisms in the Arabidopsis Circadian ClockR01GM067837 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KAY, STEVE A · 2003 to 2015
$4.7M
Molecular Mechanisms in the Arabidopsis Circadian ClockR37GM067837 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI STEVE A KAY · 2017 to 2026
$4.4M
GVA | Conselleria de Innovación, Universidades, Ciencia y Sociedad Digital, Generalitat Valenciana (CIUCSD) CIACIF/2021/29GVA | Conselleria de Innovación, Universidades, Ciencia y Sociedad Digital, Generalitat Valenciana (CIUCSD) CIACIF/2021/329GVA | Conselleria de Innovación, Universidades, Ciencia y Sociedad Digital, Generalitat Valenciana (CIUCSD) CIDEGENT/2020/037Ministerio de Ciencia e Innovación (MCIN) PID2019-108577GA-I00Ministerio de Ciencia e Innovación (MCIN) PID2020-119491GA-I00Ministerio de Ciencia e Innovación (MCIN) RYC2018-024108-INIGMS NIH HHS R01 GM067837NIGMS NIH HHS R37 GM067837
6 · The paper itself

Abstract

For plants adapted to bright light, a decrease in the amount of light received can be detrimental to their growth and survival. Consequently, in response to shade from surrounding vegetation, they initiate a suite of molecular and morphological changes known as the shade avoidance response through which stems and petioles elongate in search for light. Under sunlight-night cycles, the plant's responsiveness to shade varies across the day, being maximal at dusk time. While a role for the circadian clock in this regulation has long been proposed, mechanistic understanding of how it is achieved is incomplete. Here, we show that the clock component GIGANTEA (GI) directly interacts with the transcriptional regulator PHYTOCHROME INTERACTING FACTOR 7 (PIF7), a key player in the response to shade. GI represses PIF7 transcriptional activity and the expression of its target genes in response to shade, thereby fine-tuning the magnitude of the response to limiting light conditions. We find that under light/dark cycles, this function of GI is required to adequately modulate the gating of the response to shade at dusk. Importantly, we also show that this circuit primarily operates in epidermal cells, highlighting the relevance of tissue-specific clock-output connections for the regulation of plant development in resonance with the environment.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsGene Expression Regulation, PlantLightCircadian ClocksCircadian RhythmDNA-Binding ProteinsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsGI protein, ArabidopsisPIF7 protein, Arabidopsiscircadian gatingGIGANTEAPIF7shade avoidancetissue specificity

Identifiers

PMID39012827
PMCPMC11287147

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.