Evidence map›Paper›PMID 39012152›Full record

ArticlemBio2024

Comparative genomics and stable isotope analysis reveal the saprotrophic-pathogenic lifestyle of a neotropical fungus.

Luiz Marcelo Ribeiro Tomé, Gabriel Quintanilha-Peixoto, Diogo Henrique Costa-Rezende, Carlos A Salvador-Montoya, Domingos Cardoso, Daniel S Araújo, Jorge Marcelo Freitas, Gabriela Bielefeld Nardoto, Genivaldo Alves-Silva, Elisandro Ricardo Drechsler-Santos and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mBio, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Hybrid Genome Assembly and Annotation of the Basidiomycete FungusInternational journal of molecular sciences · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Luiz Marcelo Ribeiro Tomé *Department of Microbiology, Molecular and Computational Biology of Fungi Laboratory, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.ORCID 0000-0002-1477-5558
Gabriel Quintanilha-Peixoto *Department of Microbiology, Molecular and Computational Biology of Fungi Laboratory, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.
Diogo Henrique Costa-RezendeDepartamento de Ciências Biológicas, Programa de Pós-graduação em Botânica, Universidade Estadual de Feira de Santana, Feira de Santana, Brazil.
Carlos A Salvador-MontoyaMIND.Funga (Monitoring and Inventorying Neotropical Diversity of Fungi) - MICOLAB, Universidade Federal de Santa Catarina, Florianópolis, Brazil.
Domingos CardosoInstituto de Pesquisas Jardim Botânico do Rio de Janeiro (JBRJ), Rio de Janeiro, Brazil.
Daniel S AraújoProgram in Bioinformatics, Loyola University Chicago, Chicago, Illinois, USA.
Jorge Marcelo FreitasDepartamento de Ecologia, Universidade de Brasília, Brasília, Brazil.
Gabriela Bielefeld NardotoDepartamento de Ecologia, Universidade de Brasília, Brasília, Brazil.
Genivaldo Alves-SilvaMIND.Funga (Monitoring and Inventorying Neotropical Diversity of Fungi) - MICOLAB, Universidade Federal de Santa Catarina, Florianópolis, Brazil.
Elisandro Ricardo Drechsler-SantosMIND.Funga (Monitoring and Inventorying Neotropical Diversity of Fungi) - MICOLAB, Universidade Federal de Santa Catarina, Florianópolis, Brazil.
Aristóteles Góes-NetoDepartment of Microbiology, Molecular and Computational Biology of Fungi Laboratory, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.ORCID 0000-0002-7692-6243

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) 308880/2022-6Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) 310150/2022-1Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) 314187/2021-9
6 · The paper itself

Abstract

In terrestrial forested ecosystems, fungi may interact with trees in at least three distinct ways: (i) associated with roots as symbionts; (ii) as pathogens in roots, trunks, leaves, flowers, and fruits; or (iii) decomposing dead tree tissues on soil or even on dead tissues in living trees. Distinguishing the latter two nutrition modes is rather difficult in Hymenochaetaceae (Basidiomycota) species. Herein, we have used an integrative approach of comparative genomics, stable isotopes, host tree association, and bioclimatic data to investigate the lifestyle ecology of the scarcely known neotropical genus IMPORTANCE: This is the first genomic description for

Indexed as

GenomicsPhylogenyBasidiomycotaCarbon IsotopesFabaceaeForestsGenome, FungalNitrogen IsotopesPlant DiseasesTreesCarbon IsotopesNitrogen IsotopesC13/N15 stable isotopesCAZyFabaceaefungus-plant interactionsHymenochaetaceae

Identifiers

PMID39012152
PMCPMC11325261

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.