Evidence map›Paper›PMID 39011894›Full record

ArticleNucleic acids research2024

The RNA helicase DDX39 contributes to the nuclear export of spliceosomal U snRNA by loading of PHAX onto RNA.

Ichiro Taniguchi, Tetsuro Hirose, Mutsuhito Ohno

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Assembly mechanism of the snRNA nuclear export complex.Nature structural & molecular biology · 2025
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ichiro TaniguchiInstitute for Life and Medical Sciences, Kyoto University, Kyoto 606-8507, Japan.ORCID 0000-0002-9364-2680
Tetsuro HiroseGraduate School of Frontier Biosciences, Osaka University, Suita 565-0871, Japan.ORCID 0000-0003-1068-5464
Mutsuhito OhnoInstitute for Life and Medical Sciences, Kyoto University, Kyoto 606-8507, Japan.

Funding

AMED 21479280CREST JPMJCR20E6Japan Foundation for Applied EnzymologyJSPS 21K06016KAKENHIMEXT 26113004Narishige Zoological Science Award
6 · The paper itself

Abstract

RNA helicases are involved in RNA metabolism in an ATP-dependent manner. Although many RNA helicases unwind the RNA structure and/or remove proteins from the RNA, some can load their interacting proteins onto RNAs. Here, we developed an in vitro strategy to identify the ATP-dependent factors involved in spliceosomal uridine-rich small nuclear RNA (U snRNA) export. We identified the RNA helicase UAP56/DDX39B, a component of the mRNA export complex named the transcription-export (TREX) complex, and its closely related RNA helicase URH49/DDX39A as the factors that stimulated RNA binding of PHAX, an adapter protein for U snRNA export. ALYREF, another TREX component, acted as a bridge between PHAX and UAP56/DDX39B. We also showed that UAP56/DDX39B and ALYREF participate in U snRNA export through a mechanism distinct from that of mRNA export. This study describes a novel aspect of the TREX components for U snRNP biogenesis and highlights the loading activity of RNA helicases.

Indexed as

Active Transport, Cell NucleusDEAD-box RNA HelicasesRNA, Small NuclearSpliceosomesCell NucleusHEK293 CellsHeLa CellsHumansNuclear ProteinsNucleocytoplasmic Transport ProteinsPhosphoproteinsRNA-Binding ProteinsTranscription FactorsALYREF protein, humanDDX39A protein, humanDDX39B protein, humanDEAD-box RNA HelicasesNuclear ProteinsNucleocytoplasmic Transport ProteinsPHAX protein, humanPhosphoproteinsRNA-Binding ProteinsRNA, Small NuclearTranscription Factors

Identifiers

PMID39011894
PMCPMC11417407

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.