Evidence map›Paper›PMID 39009636›Full record

ArticleScientific reports2024

Efficient segmentation of active and inactive plaques in FLAIR-images using DeepLabV3Plus SE with efficientnetb0 backbone in multiple sclerosis.

Mahsa Naeeni Davarani, Ali Arian Darestani, Virginia Guillen Cañas, Hossein Azimi, Sanaz Heydari Havadaragh, Hasan Hashemi, Mohammd Hossein Harirchian

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Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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0cells of the map it votes in
5citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Mahsa Naeeni DavaraniUniversity of the Basque Country (UPV/EHU), Bilbao, Spain.
Ali Arian DarestaniUniversity of the Basque Country (UPV/EHU), Bilbao, Spain.
Virginia Guillen CañasDepartment of Neurosciences, University of the Basque Country (UPV/EHU), Bilbao, Spain.
Hossein AzimiFaculty of Mathematical Sciences and Computer, Kharazmi University, Tehran, Iran.
Sanaz Heydari HavadaraghNeurology Department, Imam Khomeini Hospital, Tehran University of Medical Sciences, Tehran, Iran.
Hasan HashemiDepartment of Radiology, School of Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran.
Mohammd Hossein HarirchianIranian Center of Neurological Research, Neuroscience Institute, Tehran University of Medical Sciences, Tehran, Iran. harirchn@hotmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This research paper introduces an efficient approach for the segmentation of active and inactive plaques within Fluid-attenuated inversion recovery (FLAIR) images, employing a convolutional neural network (CNN) model known as DeepLabV3Plus SE with the EfficientNetB0 backbone in Multiple sclerosis (MS), and demonstrates its superior performance compared to other CNN architectures. The study encompasses various critical components, including dataset pre-processing techniques, the utilization of the Squeeze and Excitation Network (SE-Block), and the atrous spatial separable pyramid Block to enhance segmentation capabilities. Detailed descriptions of pre-processing procedures, such as removing the cranial bone segment, image resizing, and normalization, are provided. This study analyzed a cross-sectional cohort of 100 MS patients with active brain plaques, examining 5000 MRI slices. After filtering, 1500 slices were utilized for labeling and deep learning. The training process adopts the dice coefficient as the loss function and utilizes Adam optimization. The study evaluated the model's performance using multiple metrics, including intersection over union (IOU), Dice Score, Precision, Recall, and F1-Score, and offers a comparative analysis with other CNN architectures. Results demonstrate the superior segmentation ability of the proposed model, as evidenced by an IOU of 69.87, Dice Score of 76.24, Precision of 88.89, Recall of 73.52, and F1-Score of 80.47 for the DeepLabV3+SE_EfficientNetB0 model. This research contributes to the advancement of plaque segmentation in FLAIR images and offers a compelling approach with substantial potential for medical image analysis and diagnosis.

Indexed as

Magnetic Resonance ImagingMultiple SclerosisNeural Networks, ComputerAdultBrainCross-Sectional StudiesDeep LearningFemaleHumansImage Processing, Computer-AssistedMaleMiddle Aged

Identifiers

PMID39009636
PMCPMC11251059

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.