Evidence map›Paper›PMID 39009581›Full record

ArticleNature communications2024

PRC2-AgeIndex as a universal biomarker of aging and rejuvenation.

Mahdi Moqri, Andrea Cipriano, Daniel J Simpson, Sajede Rasouli, Tara Murty, Tineke Anna de Jong, Daniel Nachun, Guilherme de Sena Brandine, Kejun Ying, Andrei Tarkhov and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Review
  2. Evolutionary genetics of ageing.Nature reviews. Genetics · 2026
    Review
  3. Review
  4. Embracing non-linearity in human ageing.Nature reviews. Genetics · 2026
    Review
  5. Article
  6. Review
  7. Killiverse: an interactive multi-omics web resource for killifish.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Mahdi Moqri *Department of Biomedical Data Science, School of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0001-6675-0566
Andrea Cipriano *Department of Obstetrics & Gynecology, School of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0003-0775-3198
Daniel J Simpson *Department of Obstetrics & Gynecology, School of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0002-8431-7384
Sajede RasouliDepartment of Obstetrics & Gynecology, School of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0002-9235-0336
Tara MurtyCenter for Cancer Cell Therapy, Stanford Cancer Institute, School of Medicine, Stanford University, Stanford, CA, USA.
Tineke Anna de JongDepartment of Obstetrics & Gynecology, School of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0002-2267-2639
Daniel NachunDepartment of Pathology, School of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0002-0271-1135
Guilherme de Sena BrandineQuantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.
Kejun YingDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-1791-6176
Andrei TarkhovDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0003-3350-4785
Karolina A AbergCenter for Biomarker Research and Precision Medicine, Virginia Commonwealth University, Richmond, VA, 23298, USA.ORCID 0000-0001-6103-5168
Edwin van den OordCenter for Biomarker Research and Precision Medicine, Virginia Commonwealth University, Richmond, VA, 23298, USA.ORCID 0000-0003-2701-4405
Wanding ZhouCenter for Computational and Genomic Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0001-9126-1932
Andrew SmithQuantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.
Crystal MackallCenter for Cancer Cell Therapy, Stanford Cancer Institute, School of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0001-6323-4304
Vadim N GladyshevDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-0372-7016
Steve HorvathDepartment of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.ORCID 0000-0002-4110-3589
Michael P SnyderDepartment of Genetics, School of Medicine, Stanford University, Stanford, CA, USA. mpsnyder@stanford.edu.ORCID 0000-0003-0784-7987
Vittorio SebastianoDepartment of Obstetrics & Gynecology, School of Medicine, Stanford University, Stanford, CA, USA. vsebast@stanford.edu.ORCID 0000-0002-8498-8655

Funding

The role of hyaluronan in longevity and cancer resistance of longest-lived rodentP01AG047200 · NIA · UNIVERSITY OF ROCHESTER · PI Andrei Seluanov · 2014 to 2026
$36.9M
Dissecting the Molecular Role of TBX1 in the Context of Human Pharyngeal EndodermDevelopmentR01HL157139 · NHLBI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Vittorio Sebastiano · 2022 to 2026
$2.0M
NHLBI NIH HHS R01 HL157139NIA NIH HHS P01 AG047200U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) 1R01HL157139-01A1
6 · The paper itself

Abstract

DNA methylation (DNAm) is one of the most reliable biomarkers of aging across mammalian tissues. While the age-dependent global loss of DNAm has been well characterized, DNAm gain is less characterized. Studies have demonstrated that CpGs which gain methylation with age are enriched in Polycomb Repressive Complex 2 (PRC2) targets. However, whole-genome examination of all PRC2 targets as well as determination of the pan-tissue or tissue-specific nature of these associations is lacking. Here, we show that low-methylated regions (LMRs) which are highly bound by PRC2 in embryonic stem cells (PRC2 LMRs) gain methylation with age in all examined somatic mitotic cells. We estimated that this epigenetic change represents around 90% of the age-dependent DNAm gain genome-wide. Therefore, we propose the "PRC2-AgeIndex," defined as the average DNAm in PRC2 LMRs, as a universal biomarker of cellular aging in somatic cells which can distinguish the effect of different anti-aging interventions.

Indexed as

AgingBiomarkersDNA MethylationEpigenesis, GeneticPolycomb Repressive Complex 2RejuvenationAnimalsCellular SenescenceCpG IslandsEmbryonic Stem CellsFemaleHumansMaleMiceBiomarkersPolycomb Repressive Complex 2

Identifiers

PMID39009581
PMCPMC11250797

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.