Evidence map›Paper›PMID 39009568›Full record

ArticleNature communications2024

Biophysical neural adaptation mechanisms enable artificial neural networks to capture dynamic retinal computation.

Saad Idrees, Michael B Manookin, Fred Rieke, Greg D Field, Joel Zylberberg

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Saad IdreesDepartment of Physics and Astronomy, York University, Toronto, ON, Canada. saidrees@yorku.ca.ORCID 0000-0002-8514-1237
Michael B ManookinDepartment of Ophthalmology, University of Washington, Seattle, WA, USA.ORCID 0000-0001-8116-7619
Fred RiekeDepartment of Physiology and Biophysics, University of Washington, Seattle, WA, USA.
Greg D FieldStein Eye Institute, Department of Ophthalmology, University of California, Los Angeles, CA, USA.ORCID 0000-0001-5942-2679
Joel ZylberbergDepartment of Physics and Astronomy, York University, Toronto, ON, Canada. joelzy@yorku.ca.ORCID 0000-0002-8208-5698

Funding

Unique physiological properties of novel ganglion cell types in primate retinaR01EY029247 · NEI · STANFORD UNIVERSITY · PI EDUARDO CHICHILNISKY, Michael B Manookin · 2018 to 2026
$4.7M
Function, diversity, and circuitry of parallel retinal ganglion cell pathwaysR01EY027323 · NEI · UNIVERSITY OF WASHINGTON · PI Michael B Manookin · 2018 to 2026
$3.9M
Mechanisms controlling retinal responses to natural stimuliR01EY028542 · NEI · UNIVERSITY OF WASHINGTON · PI FREDERICK M RIEKE · 2018 to 2026
$3.5M
Dynamic retinal coding in natural environmentsR01EY036594 · NEI · UNIVERSITY OF WASHINGTON · PI Gregory Darin Field, FREDERICK M RIEKE · 2024 to 2026
$1.4M
Receptive field coordination across mosaics of diverse retinal ganglion cell types in the mammalian retinaR01EY031396 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI FIELD, GREGORY DARIN · 2020 to 2023
$1.4M
Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada (NSERC Canadian Network for Research and Innovation in Machining Technology) RGPIN-2019-06379NEI NIH HHS R01 EY027323NEI NIH HHS R01 EY028542NEI NIH HHS R01 EY029247NEI NIH HHS R01 EY031396NEI NIH HHS R01 EY036594U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) R01-EY028542U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) R01-EY029247U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) R01-EY031396
6 · The paper itself

Abstract

Adaptation is a universal aspect of neural systems that changes circuit computations to match prevailing inputs. These changes facilitate efficient encoding of sensory inputs while avoiding saturation. Conventional artificial neural networks (ANNs) have limited adaptive capabilities, hindering their ability to reliably predict neural output under dynamic input conditions. Can embedding neural adaptive mechanisms in ANNs improve their performance? To answer this question, we develop a new deep learning model of the retina that incorporates the biophysics of photoreceptor adaptation at the front-end of conventional convolutional neural networks (CNNs). These conventional CNNs build on 'Deep Retina,' a previously developed model of retinal ganglion cell (RGC) activity. CNNs that include this new photoreceptor layer outperform conventional CNN models at predicting male and female primate and rat RGC responses to naturalistic stimuli that include dynamic local intensity changes and large changes in the ambient illumination. These improved predictions result directly from adaptation within the phototransduction cascade. This research underscores the potential of embedding models of neural adaptation in ANNs and using them to determine how neural circuits manage the complexities of encoding natural inputs that are dynamic and span a large range of light levels.

Indexed as

Neural Networks, ComputerRetinaRetinal Ganglion CellsAdaptation, PhysiologicalAnimalsDeep LearningFemaleMaleModels, NeurologicalPhotic StimulationRats

Identifiers

PMID39009568
PMCPMC11251147

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.