Evidence map›Paper›PMID 39009378›Full record

ArticleRNA (New York, N.Y.)2024

Cap-related modifications of RNA regulate binding to IFIT proteins.

Jingping Geng, Magdalena Chrabaszczewska, Karol Kurpiejewski, Anna Stankiewicz-Drogon, Marzena Jankowska-Anyszka, Edward Darzynkiewicz, Renata Grzela

Abstract read
In one paragraph

Article in RNA (New York, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jingping Geng *Interdisciplinary Laboratory of Molecular Biology and Biophysics, Centre of New Technologies, University of Warsaw, 02-097 Warsaw, Poland.
Magdalena Chrabaszczewska *Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, 02-093 Warsaw, Poland.ORCID 0000-0002-1847-5376
Karol KurpiejewskiFaculty of Chemistry, University of Warsaw, 02-093 Warsaw, Poland.ORCID 0000-0002-0982-081X
Anna Stankiewicz-DrogonDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, 02-093 Warsaw, Poland.
Marzena Jankowska-AnyszkaFaculty of Chemistry, University of Warsaw, 02-093 Warsaw, Poland.
Edward DarzynkiewiczInterdisciplinary Laboratory of Molecular Biology and Biophysics, Centre of New Technologies, University of Warsaw, 02-097 Warsaw, Poland.
Renata GrzelaDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, 02-093 Warsaw, Poland rgrzela@fuw.edu.pl.ORCID 0000-0002-1971-6012

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

All cells in our body are equipped with receptors to recognize pathogens and trigger a rapid defense response. As a result, foreign molecules are blocked, and cells are alerted to the danger. Among the many molecules produced in response to viral infection are interferon-induced proteins with tetratricopeptide repeats (IFITs). Their role is to recognize foreign mRNA and eliminate it from the translational pool of transcripts. In the present study, we used biophysical methods to characterize the interactions between the IFIT1 protein and its partners IFIT2 and IFIT3. IFIT1 interacts with IFIT3 with nanomolar binding affinity, which did not change significantly in the presence of the preformed IFIT2/3 complex. The interactions between IFIT2 and IFIT3 and IFIT1 and IFIT2 were one order of magnitude weaker. We also present kinetic data of the interactions between the IFIT protein complex and short RNA bearing various modifications at the 5' end. We show kinetic parameters for interaction between the IFIT complex and RNA with m

Indexed as

Adaptor Proteins, Signal TransducingProtein BindingRNA-Binding ProteinsApoptosis Regulatory ProteinsCarrier ProteinsHumansIntracellular Signaling Peptides and ProteinsKineticsProteinsRNA CapsRNA, MessengerAdaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsCarrier ProteinsIFIT1 protein, humanIFIT2 protein, humanIFIT3 protein, humanIntracellular Signaling Peptides and ProteinsProteinsRNA-Binding ProteinsRNA CapsRNA, MessengerCAP1cap modificationIFIT proteinsinnate immune responseM6AM

Identifiers

PMID39009378
PMCPMC11404448

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.