Evidence map›Paper›PMID 39008331›Full record

ArticleThe Journal of heredity2024

A genome assembly of the American black bear, Ursus americanus, from California.

Megan A Supple, Merly Escalona, Jillian Adkins, Michael R Buchalski, Nicolas Alexandre, Ruta M Sahasrabudhe, Oanh Nguyen, Samuel Sacco, Colin Fairbairn, Eric Beraut and 4 more

Abstract read
In one paragraph

Article in The Journal of heredity, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Megan A SuppleDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.ORCID 0000-0002-0204-7852
Merly EscalonaDepartment of Biomolecular Engineering, University of California, Santa Cruz, CA, United States.ORCID 0000-0003-0213-4777
Jillian AdkinsWildlife Forensic Lab, Law Enforcement Division, California Department of Fish and Wildlife, Sacramento, CA, United States.
Michael R BuchalskiWildlife Genetics Research Unit, Wildlife Health Laboratory, California Department of Fish and Wildlife, Sacramento, CA, United States.ORCID 0000-0002-5917-3577
Nicolas AlexandreDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.ORCID 0000-0003-1530-1570
Ruta M SahasrabudheDNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California, Davis, CA, United States.ORCID 0000-0002-3285-6845
Oanh NguyenDNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California, Davis, CA, United States.ORCID 0000-0003-1492-2084
Samuel SaccoDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.ORCID 0000-0003-1227-8934
Colin FairbairnDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.ORCID 0009-0007-8129-0095
Eric BerautDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.ORCID 0000-0002-4443-6282
William SeligmannDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.ORCID 0000-0002-5762-3095
Richard E GreenDepartment of Biomolecular Engineering, University of California, Santa Cruz, CA, United States.ORCID 0000-0003-0516-5827
Erin MeredithWildlife Forensic Lab, Law Enforcement Division, California Department of Fish and Wildlife, Sacramento, CA, United States.
Beth ShapiroDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.ORCID 0000-0002-2733-7776

Funding

Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NIH HHS S10 OD010786NIH HHS S10 OD018174University of California RSI-19-690224U.S Fish and Wildlife Service F23AF00999-00
6 · The paper itself

Abstract

The American black bear, Ursus americanus, is a widespread and ecologically important species in North America. In California, the black bear plays an important role in a variety of ecosystems and serves as an important species for recreational hunting. While research suggests that the populations in California are currently healthy, continued monitoring is critical, with genomic analyses providing an important surveillance tool. Here we report a high-quality, near chromosome-level genome assembly from a U. americanus sample from California. The primary assembly has a total length of 2.5 Gb contained in 316 scaffolds, a contig N50 of 58.9 Mb, a scaffold N50 of 67.6 Mb, and a BUSCO completeness score of 96%. This U. americanus genome assembly will provide an important resource for the targeted management of black bear populations in California, with the goal of achieving an appropriate balance between the recreational value of black bears and the maintenance of viable populations. The high quality of this genome assembly will also make it a valuable resource for comparative genomic analyses among black bear populations and among bear species.

Indexed as

GenomeUrsidaeAnimalsCaliforniaGenomicsCalifornia Conservation Genomics ProjectCCGPConservation Genomicswildlife management

Identifiers

PMID39008331
PMCPMC11334205

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.