Evidence map›Paper›PMID 39008251›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Methods for Cultivation of Bacteroides thetaiotaomicron and Analysis of Heme Metabolism by Mass Spectrometry and Spectroscopic Approaches.

Ronivaldo Rodrigues da Silva, Victoria Adedoyin, Jennifer L DuBois

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. mSphere · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ronivaldo Rodrigues da SilvaDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, USA.
Victoria AdedoyinDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, USA.
Jennifer L DuBoisDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, USA. jennifer.dubois1@montana.edu.

Funding

Understanding how heme and iron are metabolized by anaerobic commensal bacteria and host-microbiome communitiesR35GM136390 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI Jennifer L DuBois · 2020 to 2026
$2.2M
NIGMS NIH HHS R35 GM136390
6 · The paper itself

Abstract

Traditional studies of cellular metabolism have relied on the use of radioisotopes. These have clear disadvantages associated with safety and waste generation. Furthermore, detection of the labeled species by scintillation counting provides only a quantification of its presence or absence. The use of stable isotopes, by contrast, allows the application of powerful, orthogonal spectroscopic approaches such as nuclear magnetic resonance spectroscopy (NMR) and various mass spectrometric methods. Using stable isotope labeling to study heme metabolism requires integrating methods for (a) generating the heme in labeled forms, (b) cultivating and quantifying the organism of choice in chemically defined media, to which labeled compounds can be added, (c) recovering cellular components and/or spent growth media, and (d) analyzing these materials for the labeled species using spectroscopic and mass spectrometric methods. These methods are summarized here in the context of Bacteroides thetaiotaomicron, a generally nonpathogenic anaerobe and heme auxotroph.

Indexed as

Bacteroides thetaiotaomicronHemeMass SpectrometryCulture MediaIsotope LabelingMagnetic Resonance SpectroscopyCulture MediaHemeAnaerobeBacteriaBacteroidesHeme metabolismLC-MSMetabolomicsMicrobiomeStable isotope

Identifiers

PMID39008251
PMCPMC11753472

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.