Evidence map›Paper›PMID 39007603›Full record

ArticleApplied and environmental microbiology2024

Isolation and genomic analysis of "

David Hsu, Jack R Flynn, Christopher J Schuler, Cara M Santelli, Brandy M Toner, Daniel R Bond, Jeffrey A Gralnick

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Applied and environmental microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Planetary microbiology: microbes, planets, and the search for life.Applied and environmental microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

David HsuBioTechnology Institute, University of Minnesota-Twin Cities, St. Paul, Minnesota, USA.ORCID 0000-0002-7219-3193
Jack R FlynnBioTechnology Institute, University of Minnesota-Twin Cities, St. Paul, Minnesota, USA.
Christopher J SchulerBioTechnology Institute, University of Minnesota-Twin Cities, St. Paul, Minnesota, USA.
Cara M SantelliBioTechnology Institute, University of Minnesota-Twin Cities, St. Paul, Minnesota, USA.
Brandy M TonerBioTechnology Institute, University of Minnesota-Twin Cities, St. Paul, Minnesota, USA.
Daniel R BondBioTechnology Institute, University of Minnesota-Twin Cities, St. Paul, Minnesota, USA.ORCID 0000-0001-8083-7107
Jeffrey A GralnickBioTechnology Institute, University of Minnesota-Twin Cities, St. Paul, Minnesota, USA.ORCID 0000-0001-9250-7770

Funding

TRAINING FOR FUTURE BIOTECHNOLOGY DEVELOPMENTT32GM008347 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI SCHMIDT-DANNERT, CLAUDIA · 1990 to 2021
$11.0M
National Science Foundation (NSF) IES-1813526NIGMS NIH HHS T32 GM008347
6 · The paper itself

Abstract

The Soudan Underground Mine State Park, found in the Vermilion Iron Range in northern Minnesota, provides access to a ~ 2.7 billion-year-old banded iron formation. Exploratory boreholes drilled between 1958 and 1962 on the 27th level (713 m underground) of the mine intersect calcium and iron-rich brines that have recently been subject to metagenomic analysis and microbial enrichments. Using concentrated brine samples pumped from a borehole depth of up to 55 m, a novel Gram-positive bacterium was enriched under anaerobic, acetate-oxidizing, and Fe(III) citrate-reducing conditions. The isolated bacterium, designated strain MK1, is non-motile, rod-shaped, spore-forming, anaerobic, and mesophilic, with a growth range between 24°C and 30°C. The complete circular MK1 genome was found to be 3,720,236 bp and encodes 25 putative multiheme cytochromes, including homologs to inner membrane cytochromes in the Gram-negative bacterium

Indexed as

Genome, BacterialOxidation-ReductionPhylogenyFerric CompoundsGram-Positive BacteriaIronMiningMinnesotaRNA, Ribosomal, 16SFerric CompoundsIronRNA, Ribosomal, 16Sdeep biosphereiron reductionsubsurface microbiology

Identifiers

PMID39007603
PMCPMC11337815

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.