Evidence map›Paper›PMID 39005467›Full record

ArticlebioRxiv : the preprint server for biology2024

tRNA modification profiling reveals epitranscriptome regulatory networks in

Jingjing Sun, Junzhou Wu, Yifeng Yuan, Leon Fan, Wei Lin Patrina Chua, Yan Han Sharon Ling, Seetharamsing Balamkundu, Dwija Priya, Hazel Chay Suen Suen, Valérie de Crécy-Lagard and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Jingjing SunDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 USA.
Junzhou WuDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 USA.
Yifeng YuanDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 USA.
Leon FanDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 USA.
Wei Lin Patrina ChuaAntimicrobial Resistance Interdisciplinary Research Group, Singapore-MIT Alliance for Research and Technology, 138602 Singapore.
Yan Han Sharon LingAntimicrobial Resistance Interdisciplinary Research Group, Singapore-MIT Alliance for Research and Technology, 138602 Singapore.
Seetharamsing BalamkunduSchool of Biological Sciences, Nanyang Technological University, Singapore.
Dwija PriyaAntimicrobial Resistance Interdisciplinary Research Group, Singapore-MIT Alliance for Research and Technology, 138602 Singapore.
Hazel Chay Suen SuenDepartment of Food, Chemical & Biotechnology, Singapore of Institute of Technology, 138683 Singapore.
Valérie de Crécy-LagardDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611 USA.
Agnieszka DziergowskaInstitute of Organic Chemistry, Lodz University of Technology, 90-924 Poland.
Peter C DedonDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 USA.ORCID 0000-0003-0011-3067

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI YAFFE, MICHAEL B · 1985 to 2020
$25.6M
Supplement: Epigenetics of the Human Gut MicrobiomeR01ES031576 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ALM, ERIC JOHN, DEDON, PETER C · 2019 to 2023
$1.9M
NIEHS NIH HHS P30 ES002109NIEHS NIH HHS R01 ES031576
6 · The paper itself

Abstract

Transfer RNA (tRNA) modifications have emerged as critical posttranscriptional regulators of gene expression affecting diverse biological and disease processes. While there is extensive knowledge about the enzymes installing the dozens of post-transcriptional tRNA modifications - the tRNA epitranscriptome - very little is known about how metabolic, signaling, and other networks integrate to regulate tRNA modification levels. Here we took a comprehensive first step at understanding epitranscriptome regulatory networks by developing a high-throughput tRNA isolation and mass spectrometry-based modification profiling platform and applying it to a

Identifiers

PMID39005467
PMCPMC11245014

What OpenQuestion holds

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LicenceCC BY-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.