Evidence map›Paper›PMID 39003336›Full record

ArticleScientific reports2024

Efficient synthesis of CRISPR-Cas13a-antimicrobial capsids against MRSA facilitated by silent mutation incorporation.

Yuzuki Shimamori, Xin-Ee Tan, Feng-Yu Li, Yutaro Nishikawa, Shinya Watanabe, Teppei Sasahara, Kazuhiko Miyanaga, Yoshifumi Aiba, Srivani Veeranarayanan, Kanate Thitiananpakorn and 23 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Review
  3. CRISPR-driven strategies to disrupt methicillin-resistantFrontiers in cellular and infection microbiology · 2026
    Review
  4. Review
  5. Review
  6. Article
  7. Methicillin-ResistantAntibiotics (Basel, Switzerland) · 2025
    Review
  8. Review
  9. Review
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Yuzuki Shimamori *Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Xin-Ee Tan *Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Feng-Yu Li *Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Yutaro NishikawaDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Shinya WatanabeDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Teppei SasaharaDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Kazuhiko MiyanagaDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Yoshifumi AibaDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Srivani VeeranarayananDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Kanate ThitiananpakornDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Huong Minh NguyenDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Anujin BatboldDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Tergel NayanjinDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Adeline Yeo Syin LianDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Sarah HossainDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Tomofumi KawaguchiDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Ola AlessaDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Geofrey KumwendaDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Jayathilake SarangiDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Jastin Edrian C RevillezaDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Priyanka BaranwalDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Mahmoud ArbaahDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
ManiruzzamanDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Liu YiDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Ho Thi My DuyenDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Takashi SuganoDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Sharmin SultanaDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Mohammad Omar FarukDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Yuya HidakaDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Myat ThuDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Takayuki ShimojyoEIKEN CHEMICAL CO., LTD., Nogi, Shimotsuga District, Tochigi, 329-0114, Japan.
Kotaro KigaDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan.
Longzhu CuiDivision of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University, Shimotsuke City, Tochigi, 329-0498, Japan. longzhu@jichi.ac.jp.

Funding

Japan Agency for Medical Research and Development JP21ae0121045Japan Agency for Medical Research and Development JP21fk0108497Japan Agency for Medical Research and Development JP23wm0325065JSPS KAKENHI 21K19488JSPS KAKENHI 21K19666JSPS KAKENHI 22K15673JSPS KAKENHI 22K19386Moonshot Research and Development Program JPJ009237
6 · The paper itself

Abstract

In response to the escalating global threat of antimicrobial resistance, our laboratory has established a phagemid packaging system for the generation of CRISPR-Cas13a-antimicrobial capsids targeting methicillin-resistant Staphylococcus aureus (MRSA). However, a significant challenge arose during the packaging process: the unintentional production of wild-type phages alongside the antimicrobial capsids. To address this issue, the phagemid packaging system was optimized by strategically incorporated silent mutations. This approach effectively minimized contamination risks without compromising packaging efficiency. The study identified the indispensable role of phage packaging genes, particularly terL-terS, in efficient phagemid packaging. Additionally, the elimination of homologous sequences between the phagemid and wild-type phage genome was crucial in preventing wild-type phage contamination. The optimized phagemid-LSAB(mosaic) demonstrated sequence-specific killing, efficiently eliminating MRSA strains carrying target antibiotic-resistant genes. While acknowledging the need for further exploration across bacterial species and in vivo validation, this refined phagemid packaging system offers a valuable advancement in the development of CRISPR-Cas13a-based antimicrobials, shedding light on potential solutions in the ongoing battle against bacterial infections.

Indexed as

CapsidCRISPR-Cas SystemsMethicillin-Resistant Staphylococcus aureusMutationAnti-Bacterial AgentsBacteriophagesAnti-Bacterial Agents

Identifiers

PMID39003336
PMCPMC11246472

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.