Evidence map›Paper›PMID 39003301›Full record

ArticleNature communications2024

Tradeoff between speed and robustness in primordium initiation mediated by auxin-CUC1 interaction.

Shuyao Kong, Mingyuan Zhu, David Pan, Brendan Lane, Richard S Smith, Adrienne H K Roeder

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  3. Review
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  5. Review
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  7. Brassinosteroids mediate proper coordination of sepal elongation.bioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Article
  10. Review
  11. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Shuyao KongWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY, 14853, USA.ORCID 0000-0002-3124-8899
Mingyuan ZhuWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY, 14853, USA.
David PanWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY, 14853, USA.
Brendan LaneDepartment of Computational and Systems Biology, John Innes Centre, Norwich, NR4 7UH, UK.ORCID 0000-0002-1492-3864
Richard S SmithDepartment of Computational and Systems Biology, John Innes Centre, Norwich, NR4 7UH, UK.ORCID 0000-0001-9220-0787
Adrienne H K RoederWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY, 14853, USA. ahr75@cornell.edu.ORCID 0000-0001-6685-2984

Funding

Mechanisms of robustness in organogenesis (Equipment Supplement 2023)R01GM134037 · NIGMS · CORNELL UNIVERSITY · PI ROEDER, ADRIENNE H · 2020 to 2023
$1.5M
NIGMS NIH HHS R01 GM134037RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/X01102X/1U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM134037
6 · The paper itself

Abstract

Robustness is the reproducible development of a phenotype despite stochastic noise. It often involves tradeoffs with other performance metrics, but the mechanisms underlying such tradeoffs were largely unknown. An Arabidopsis flower robustly develops four sepals from four precisely positioned auxin maxima. The development related myb-like 1 (drmy1) mutant generates noise in auxin signaling that disrupts robustness in sepal initiation. Here, we find that increased expression of CUP-SHAPED COTYLEDON1 (CUC1), a boundary specification transcription factor, in drmy1 underlies this loss of robustness. CUC1 surrounds and amplifies stochastic auxin noise in drmy1 to form variably positioned auxin maxima and sepal primordia. Removing CUC1 from drmy1 provides time for noisy auxin signaling to resolve into four precisely positioned auxin maxima, restoring robust sepal initiation. However, removing CUC1 decreases the intensity of auxin maxima and slows down sepal initiation. Thus, CUC1 increases morphogenesis speed but impairs robustness against auxin noise. Further, using a computational model, we find that the observed phenotype can be explained by the effect of CUC1 in repolarizing PIN FORMED1 (PIN1), a polar auxin transporter. Lastly, our model predicts that reducing global growth rate improves developmental robustness, which we validate experimentally. Thus, our study illustrates a tradeoff between speed and robustness during development.

Indexed as

ArabidopsisArabidopsis ProteinsFlowersGene Expression Regulation, PlantIndoleacetic AcidsTranscription FactorsMutationPhenotypePlants, Genetically ModifiedSignal TransductionArabidopsis ProteinsCUC1 protein, ArabidopsisIndoleacetic AcidsTranscription Factors

Identifiers

PMID39003301
PMCPMC11246466

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.