Evidence map›Paper›PMID 39001588›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2024

Infrared Spectroscopy of SARS-CoV-2 Viral Protein: from Receptor Binding Domain to Spike Protein.

Tiziana Mancini, Salvatore Macis, Rosanna Mosetti, Nicole Luchetti, Velia Minicozzi, Andrea Notargiacomo, Marialilia Pea, Augusto Marcelli, Giancarlo Della Ventura, Stefano Lupi and 1 more

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Tiziana ManciniDepartment of Physics, University La Sapienza, P.le A. Moro 2, Rome, 00185, Italy.ORCID 0000-0003-4399-3869
Salvatore MacisDepartment of Physics, University La Sapienza, P.le A. Moro 2, Rome, 00185, Italy.ORCID 0000-0003-2360-2920
Rosanna MosettiDepartment of Basic and Applied Sciences for Engineering (SBAI), University La Sapienza, Via A. Scarpa 16, Rome, 00161, Italy.ORCID 0000-0001-6768-3967
Nicole LuchettiEngineering Department, University Campus Bio-Medico of Rome, Via Alvaro del Portillo 21, Rome, 00128, Italy.
Velia MinicozziDepartment of Physics, University of Rome Tor Vergata, Via della Ricerca Scientifica 1, Rome, 00133, Italy.
Andrea NotargiacomoIstituto di fotonica e nanotecnologie - Consiglio nazionale delle ricerche (CNR-IFN), Rome, 00133, Italy.ORCID 0000-0002-7177-9096
Marialilia PeaIstituto di fotonica e nanotecnologie - Consiglio nazionale delle ricerche (CNR-IFN), Rome, 00133, Italy.ORCID 0000-0002-6933-6982
Augusto MarcelliLaboratori Nazionali Frascati, National Institute for Nuclear Physics (INFN-LNF), Via E. Fermi 54, Frascati, 00044, Italy.ORCID 0000-0002-8138-7547
Giancarlo Della VenturaDepartment of Science, University Rome Tre, Largo San Leonardo Murialdo 1, Rome, 00146, Italy.ORCID 0000-0001-6277-961X
Stefano LupiDepartment of Physics, University La Sapienza, P.le A. Moro 2, Rome, 00185, Italy.
Annalisa D'ArcoDepartment of Physics, University La Sapienza, P.le A. Moro 2, Rome, 00185, Italy.ORCID 0000-0001-7990-5117

Funding

NATO Science for Peace and Security Program G5889Next Generation EU (NGEU) PRIN PNRR 2022 MIUR P2022NMBAJ
6 · The paper itself

Abstract

Spike (S) glycoprotein is the largest structural protein of SARS-CoV-2 virus and the main one involved in anchoring of the host receptor ACE2 through the receptor binding domain (RBD). S protein secondary structure is of great interest for shedding light on various aspects, from functionality to pathogenesis, finally to spectral fingerprint for the design of optical biosensors. In this paper, the secondary structure of SARS-CoV-2 S protein and its constituting components, namely RBD, S1 and S2 regions, are investigated at serological pH by measuring their amide I infrared absorption bands through Attenuated Total Reflection Infrared (ATR-IR) spectroscopy. Experimental data in combination with MultiFOLD predictions, Define Secondary Structure of Proteins (DSSP) web server and Gravy value calculations, provide a comprehensive understanding of RBD, S1, S2, and S proteins in terms of their secondary structure content, conformational order, and interaction with the solvent.

Indexed as

SARS-CoV-2Spectrophotometry, InfraredSpike Glycoprotein, CoronavirusCOVID-19HumansProtein BindingProtein DomainsProtein Structure, SecondarySpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2ATR‐IR spectroscopyhydrophobicityMultiFOLDsecondary structureSpike glycoproteins

Identifiers

PMID39001588
PMCPMC11497030

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.