Evidence map›Paper›PMID 38997286›Full record

ArticleNature communications2024

KAP1 negatively regulates RNA polymerase II elongation kinetics to activate signal-induced transcription.

Usman Hyder, Ashwini Challa, Micah Thornton, Tulip Nandu, W Lee Kraus, Iván D'Orso

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Usman HyderDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID 0000-0002-7655-1533
Ashwini ChallaDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Micah ThorntonLaboratory of Signaling and Gene Regulation, Cecil H. and Ida Green Center for Reproductive Biology Sciences, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID 0000-0002-9093-045X
Tulip NanduLaboratory of Signaling and Gene Regulation, Cecil H. and Ida Green Center for Reproductive Biology Sciences, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
W Lee KrausLaboratory of Signaling and Gene Regulation, Cecil H. and Ida Green Center for Reproductive Biology Sciences, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID 0000-0002-8786-2986
Iván D'OrsoDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA. Ivan.Dorso@utsouthwestern.edu.ORCID 0000-0002-1409-2351

Funding

UNIVERSITY OF TEXAS--SPORE IN LUNG CANCERP50CA070907 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI HEYMACH, JOHN V., MINNA, JOHN D. · 1996 to 2024
$57.4M
UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MELANIE H. COBB · 2010 to 2026
$53.7M
University of Texas Southwestern Medical Center SPORE in Kidney CancerP50CA196516 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI James Brugarolas · 2016 to 2026
$24.7M
Dose-Dependent Effects of Hormone on the Activity of Estrogen Receptor Enhancers and Target GenesR01DK058110 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI WILLIAM Lee KRAUS · 2000 to 2026
$10.4M
Transcriptional regulatory mechanisms shaping HIV proviral fateR01AI114362 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI D'ORSO, IVAN · 2015 to 2024
$4.6M
Transcriptional regulatory mechanisms shaping HIV proviral fateR37AI114362 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Ivan D'Orso · 2025 to 2026
$1.0M
Delineating the Role of KAP1 in WNT-induced Colorectal CancerR03CA259672 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI D'ORSO, IVAN · 2022 to 2023
$164k
Exploiting Oncogenic Chromatin Regulators in Cancer Initiation and ProgressionF99CA264296 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI HYDER, USMAN · 2021 to 2022
$72k
NCI NIH HHS F99 CA264296NCI NIH HHS P30 CA142543NCI NIH HHS P50 CA070907NCI NIH HHS P50 CA196516NCI NIH HHS R03 CA259672NIAID NIH HHS R01 AI114362NIAID NIH HHS R37 AI114362NIDDK NIH HHS R01 DK058110U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) F99CA264296U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) R01DK058110
6 · The paper itself

Abstract

Signal-induced transcriptional programs regulate critical biological processes through the precise spatiotemporal activation of Immediate Early Genes (IEGs); however, the mechanisms of transcription induction remain poorly understood. By combining an acute depletion system with several genomics approaches to interrogate synchronized, temporal transcription, we reveal that KAP1/TRIM28 is a first responder that fulfills the temporal and heightened transcriptional demand of IEGs. Acute KAP1 loss triggers an increase in RNA polymerase II elongation kinetics during early stimulation time points. This elongation defect derails the normal progression through the transcriptional cycle during late stimulation time points, ultimately leading to decreased recruitment of the transcription apparatus for re-initiation thereby dampening IEGs transcriptional output. Collectively, KAP1 plays a counterintuitive role by negatively regulating transcription elongation to support full activation across multiple transcription cycles of genes critical for cell physiology and organismal functions.

Indexed as

RNA Polymerase IITripartite Motif-Containing Protein 28AnimalsGenes, Immediate-EarlyHumansKineticsSignal TransductionTranscriptional ActivationTranscription Elongation, GeneticTranscription, GeneticRNA Polymerase IITRIM28 protein, humanTripartite Motif-Containing Protein 28

Identifiers

PMID38997286
PMCPMC11245487

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.