Evidence map›Paper›PMID 38994355›Full record

ArticleFrontiers in immunology2024

Molecular insights into STAT1a protein in rohu (

Basanta Kumar Das, Soumya Prasad Panda, Smruti Priyambada Pradhan, Subhashree Subhasmita Raut, Mala Kumari, Dharmendra Kumar Meena

Abstract read
In one paragraph

Article in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Basanta Kumar DasAquatic Environmental Biotechnology (AEB) Division, Indian Council of Agricultural Research (ICAR) - Central Inland Fisheries Research Institute, Kolkata, West Bengal, India.
Soumya Prasad PandaAquatic Environmental Biotechnology (AEB) Division, Indian Council of Agricultural Research (ICAR) - Central Inland Fisheries Research Institute, Kolkata, West Bengal, India.
Smruti Priyambada PradhanAquatic Environmental Biotechnology (AEB) Division, Indian Council of Agricultural Research (ICAR) - Central Inland Fisheries Research Institute, Kolkata, West Bengal, India.
Subhashree Subhasmita RautAquatic Environmental Biotechnology (AEB) Division, Indian Council of Agricultural Research (ICAR) - Central Inland Fisheries Research Institute, Kolkata, West Bengal, India.
Mala KumariRiverine & Estuaries Fisheries Division, Indian Council of Agricultural Research (ICAR) -Central Inland Fisheries Research Institute, Kolkata, West Bengal, India.
Dharmendra Kumar MeenaOpen Water Aquaculture Production and Management (OWAPM) Division, Indian Council of Agricultural Research (ICAR)-Central Inland Fisheries Research Institute, Kolkata, West Bengal, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: STAT1a is an essential signal transduction protein involved in the interferon pathway, playing a vital role in IFN-alpha/beta and gamma signaling. Limited information is available about the STAT protein in fish, particularly in Indian major carps (IMC). This study aimed to identify and characterize the STAT1a protein in Methods: The full-length CDS of LrSTAT1a transcript was identified and sequenced. Phylogenetic analyses were performed based on the nucleotide sequences. The in-vivo immune stimulant poly I: C was used to treat various tissues, and the expression of LrSTAT1a was determined using quantitative real-time polymerase chain reaction (qRT-PCR). A 3D model of the STAT1a protein was generated using close structure homologs available in the database and checked using molecular dynamics (MD) simulations. Results: The full-length CDS of Discussion: This study provides molecular insights into the STAT1a protein in Rohu (

Indexed as

CyprinidaeFish ProteinsSTAT1 Transcription FactorAmino Acid SequenceBase SequenceDNA, ComplementaryGene Expression RegulationKineticsModels, MolecularMolecular Docking SimulationPhylogenyPoly I-CProtein Interaction Domains and MotifsProtein Structure, TertiarySequence AlignmentSequence Homology, Amino AcidDNA, ComplementaryFish ProteinsPoly I-CSTAT1 Transcription Factor3D modelingimmune responseinnate immunityinterferon pathwayLabeo rohitamolecular dynamics simulationsphylogenetic analysisSTAT1a

Identifiers

PMID38994355
PMCPMC11237311

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.