Evidence map›Paper›PMID 38993944›Full record

ArticleFrontiers in plant science2024

Chromosome genome assembly of the

Kuan Yan, Hui Zhu, Guiling Cao, Lina Meng, Junqiang Li, Jian Zhang, Sicen Liu, Yujie Wang, Ruizhang Feng, Salma A Soaud and 5 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in plant science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Kuan Yan *Faculty of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China.
Hui Zhu *State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystem, College of Ecology, Lanzhou University, Lanzhou, China.
Guiling CaoFaculty of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China.
Lina MengFaculty of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China.
Junqiang LiFaculty of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China.
Jian ZhangFaculty of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China.
Sicen LiuFaculty of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China.
Yujie WangFaculty of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China.
Ruizhang FengFaculty of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China.
Salma A SoaudGenetics Department, Faculty of Agriculture, Zagazig University, Zagazig, Egypt.
Mohamed A Abd ElhamidGenetics Department, Faculty of Agriculture, Zagazig University, Zagazig, Egypt.
Rania M Y HeakelGenetics Department, Faculty of Agriculture, Zagazig University, Zagazig, Egypt.
Qin WeiFaculty of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China.
Ahmed H El-SappahFaculty of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China.
Dafu RuState Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystem, College of Ecology, Lanzhou University, Lanzhou, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Methods: To bridge this gap, the present study aimed to use PacBio HiFi, short-read, and highthroughput chromosome conformation capture sequencing to construct a chromosome-level assembly of the Results and discussion: With twelve chromosomes accounting for 99.82% (766.69 Mb) of the final genome assembly, which covered 768.10 Mb, it was very complete. Remarkably, the assembly's contig and scaffold N50 values are exceptional as well-41.12 and 63.78 Mb, respectively-highlighting its excellent quality and intact structure. Furthermore, a total of 39,173 protein-coding genes were predicted, with 38,766 (98.96%) of them being functionally annotated. The completeness of the genome was confirmed by the Benchmarking Universal Single-Copy Ortholog evaluation, which revealed 99.01% of highly conserved plant genes. As the first comprehensive assembly of the

Indexed as

Camphora longepaniculatahigh-throughput sequencingprotein-coding genesterpenoidtraditional Chinese medicine

Identifiers

PMID38993944
PMCPMC11238478

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.