Evidence map›Paper›PMID 38992075›Full record

ArticleScientific reports2024

Exploring cell death mechanisms in spheroid cultures using a novel application of the RIP3-caspase3-assay.

C I Philippi, J Hagens, K M Heuer, H C Schmidt, P Schuppert, L Pagerols Raluy, M Trochimiuk, Z Li, M J Bunders, K Reinshagen and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

C I Philippi *Department of Pediatric Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
J Hagens *Department of Pediatric Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
K M HeuerDepartment of Pediatric Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
H C SchmidtDepartment of Pediatric Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
P SchuppertDepartment of Pediatric Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
L Pagerols RaluyDepartment of Pediatric Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
M TrochimiukDepartment of Pediatric Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Z LiDepartment of Pediatric Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
M J BundersResearch Department of Virus Immunology, Leibniz Institute of Virology, Hamburg, Germany.
K ReinshagenDepartment of Pediatric Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
C TomuschatDepartment of Pediatric Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany. c.tomuschat@uke.de.

Funding

Else Kröner-Fresenius-Stiftung iPRIME Scholarship, UKE, Hamburg 2021_EKPK.10
6 · The paper itself

Abstract

This study explores the application of the RIP3-caspase3-assay in heterogeneous spheroid cultures to analyze cell death pathways, emphasizing the nuanced roles of apoptosis and necroptosis. By employing directly conjugated monoclonal antibodies, we provide detailed insights into the complex mechanisms of cell death. Our findings demonstrate the assay's capability to differentiate between RIP1-independent apoptosis, necroptosis, and RIP1-dependent apoptosis, marking a significant advancement in organoid research. Additionally, we investigate the effects of TNFα on isolated intestinal epithelial cells, revealing a concentration-dependent response and an adaptive or threshold reaction to TNFα-induced stress. The results indicate a preference for RIP1-independent cell death pathways upon TNFα stimulation, with a notable increase in apoptosis and a secondary role of necroptosis. Our research underscores the importance of the RIP3-caspase3-assay in understanding cell death mechanisms in organoid cultures, offering valuable insights for disease modeling and the development of targeted therapies. The assay's adaptability and robustness in spheroid cultures enhances its potential as a tool in personalized medicine and translational research.

Indexed as

ApoptosisCaspase 3NecroptosisReceptor-Interacting Protein Serine-Threonine KinasesSpheroids, CellularCell DeathHumansOrganoidsTumor Necrosis Factor-alphaCASP3 protein, humanCaspase 3Receptor-Interacting Protein Serine-Threonine KinasesRIPK3 protein, humanTumor Necrosis Factor-alphaApoptosis and necroptosisCell death mechanismsOrganoidsRIP3-caspase3 assayTNFα -induced stress

Identifiers

PMID38992075
PMCPMC11239891

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.