Evidence map›Paper›PMID 38992052›Full record

ArticleNature communications2024

Natural variation of TBR confers plant zinc toxicity tolerance through root cell wall pectin methylesterification.

Kaizhen Zhong, Peng Zhang, Xiangjin Wei, Matthieu Pierre Platre, Wenrong He, Ling Zhang, Anna Małolepszy, Min Cao, Shikai Hu, Shaoqing Tang and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Kaizhen ZhongState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou, Zhejiang, China.
Peng ZhangState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou, Zhejiang, China.ORCID 0000-0003-2224-9942
Xiangjin WeiState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou, Zhejiang, China.ORCID 0000-0002-1190-5222
Matthieu Pierre PlatrePlant Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-4934-3050
Wenrong HePlant Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.
Ling ZhangPlant Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.
Anna MałolepszyPlant Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.
Min CaoPlant Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.
Shikai HuState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou, Zhejiang, China.
Shaoqing TangState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou, Zhejiang, China.
Baohai LiPlant Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA. bhli@zju.edu.cn.ORCID 0000-0002-9905-5890
Peisong HuState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou, Zhejiang, China. hupeisong@caas.cn.ORCID 0000-0002-8568-5621
Wolfgang BuschPlant Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA. wbusch@salk.edu.ORCID 0000-0003-2042-7290

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32172656National Natural Science Foundation of China (National Science Foundation of China) 32188102
6 · The paper itself

Abstract

Zinc (Zn) is an essential micronutrient but can be cytotoxic when present in excess. Plants have evolved mechanisms to tolerate Zn toxicity. To identify genetic loci responsible for natural variation of plant tolerance to Zn toxicity, we conduct genome-wide association studies for root growth responses to high Zn and identify 21 significant associated loci. Among these loci, we identify Trichome Birefringence (TBR) allelic variation determining root growth variation in high Zn conditions. Natural alleles of TBR determine TBR transcript and protein levels which affect pectin methylesterification in root cell walls. Together with previously published data showing that pectin methylesterification increase goes along with decreased Zn binding to cell walls in TBR mutants, our findings lead to a model in which TBR allelic variation enables Zn tolerance through modulating root cell wall pectin methylesterification. The role of TBR in Zn tolerance is conserved across dicot and monocot plant species.

Indexed as

ArabidopsisCell WallGene Expression Regulation, PlantPectinsPlant RootsZincAllelesArabidopsis ProteinsEsterificationGenetic VariationGenome-Wide Association StudyArabidopsis ProteinsPectinsZinc

Identifiers

PMID38992052
PMCPMC11239920

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.