Evidence map›Paper›PMID 38992034›Full record

ArticleNature communications2024

Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer.

Suzanne J Forrest, Hersh Gupta, Abigail Ward, Yvonne Y Li, Duong Doan, Alyaa Al-Ibraheemi, Sanda Alexandrescu, Pratiti Bandopadhayay, Suzanne Shusterman, Elizabeth A Mullen and 23 more

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
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  8. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors.

Suzanne J ForrestDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA. Suzanne_Forrest@dfci.harvard.edu.ORCID 0000-0002-9797-7947
Hersh GuptaDana-Farber Cancer Institute, Boston, MA, USA.
Abigail WardDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.
Yvonne Y LiDana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0002-1741-1995
Duong DoanDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.
Alyaa Al-IbraheemiHarvard Medical School, Boston, MA, USA.
Sanda AlexandrescuHarvard Medical School, Boston, MA, USA.
Pratiti BandopadhayayDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.ORCID 0000-0002-4175-4760
Suzanne ShustermanDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.
Elizabeth A MullenDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.ORCID 0000-0002-6704-0002
Natalie B CollinsDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.ORCID 0000-0003-2980-9244
Susan N ChiDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.
Karen D WrightDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.
Priti KumariDana-Farber Cancer Institute, Boston, MA, USA.
Tali MazorDana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0002-0138-9615
Keith L LigonHarvard Medical School, Boston, MA, USA.ORCID 0000-0002-7733-600X
Priyanka ShivdasaniBrigham and Women's Hospital, Boston, MA, USA.
Monica ManamBoston Children's Hospital, Boston, MA, USA.
Laura E MacConaillBrigham and Women's Hospital, Boston, MA, USA.
Evelina CecaDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.
Sidney N BenichDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.
Wendy B LondonDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.ORCID 0000-0003-3571-6538
Richard L SchilskyAmerican Society of Clinical Oncology, Alexandria, VA, USA.ORCID 0000-0003-4474-4303
Suanna S BruinoogeAmerican Society of Clinical Oncology, Alexandria, VA, USA.ORCID 0000-0002-9936-2719
Jaime M Guidry AuvilNational Cancer Institute, Bethesda, MD, USA.
Ethan CeramiDana-Farber Cancer Institute, Boston, MA, USA.
Barrett J RollinsHarvard Medical School, Boston, MA, USA.
Matthew L MeyersonHarvard Medical School, Boston, MA, USA.ORCID 0000-0002-9133-8108
Neal I LindemanWeill Cornell Medical College, New York, NY, USA.
Bruce E JohnsonHarvard Medical School, Boston, MA, USA.
Andrew D CherniackDana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0003-0470-0111
Alanna J ChurchHarvard Medical School, Boston, MA, USA.ORCID 0000-0002-4835-5770
Katherine A JanewayDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA. Katherine_Janeway@dfci.harvard.edu.ORCID 0000-0001-6000-3594

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI JENNIFER W MACK · 1985 to 2026
$330.6M
NCI NIH HHS P30 CA006516NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

To inform clinical trial design and real-world precision pediatric oncology practice, we classified diagnoses, assessed the landscape of mutations, and identified genomic variants matching trials in a large unselected institutional cohort of solid tumors patients sequenced at Dana-Farber / Boston Children's Cancer and Blood Disorders Center. Tumors were sequenced with OncoPanel, a targeted next-generation DNA sequencing panel. Diagnoses were classified according to the International Classification of Diseases for Oncology (ICD-O-3.2). Over 6.5 years, 888 pediatric cancer patients with 95 distinct diagnoses had successful tumor sequencing. Overall, 33% (n = 289/888) of patients had at least 1 variant matching a precision oncology trial protocol, and 14% (41/289) were treated with molecularly targeted therapy. This study highlights opportunities to use genomic data from hospital-based sequencing performed either for research or clinical care to inform ongoing and future precision oncology clinical trials. Furthermore, the study results emphasize the importance of data sharing to define the genomic landscape and targeted treatment opportunities for the large group of rare pediatric cancers we encounter in clinical practice.

Indexed as

High-Throughput Nucleotide SequencingInformation DisseminationNeoplasmsPrecision MedicineAdolescentChildChild, PreschoolClinical Trials as TopicFemaleGenomicsHumansInfantInfant, NewbornMaleMolecular Targeted TherapyMutation

Identifiers

PMID38992034
PMCPMC11239876

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.