Evidence map›Paper›PMID 38991546›Full record

ArticleACS synthetic biology2024

Degron-Based bioPROTACs for Controlling Signaling in CAR T Cells.

Matthew S Kim, Hersh K Bhargava, Gavin E Shavey, Wendell A Lim, Hana El-Samad, Andrew H Ng

Abstract readLetter
In one paragraph

Article in ACS synthetic biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Emerging biologic modalities for targeted protein degradation.The Journal of biological chemistry · 2026
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Targeted degradation of the HPV oncoprotein E6 reduces tumor burden in cervical cancer.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  10. Article
  11. Review
  12. bioRxiv : the preprint server for biology · 2024
    Article
  13. Article
  14. Review
  15. Review
  16. Transcriptional rewiring in CD8Frontiers in immunology · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Matthew S KimTetrad Graduate Program, University of California San Francisco, San Francisco, California 94158, United States.ORCID 0000-0002-5836-8874
Hersh K BhargavaCell Design Institute, University of California San Francisco, San Francisco, California 94158, United States.
Gavin E ShaveyCell Design Institute, University of California San Francisco, San Francisco, California 94158, United States.
Wendell A LimCell Design Institute, University of California San Francisco, San Francisco, California 94158, United States.
Hana El-SamadCell Design Institute, University of California San Francisco, San Francisco, California 94158, United States.
Andrew H NgCell Design Institute, University of California San Francisco, San Francisco, California 94158, United States.

Funding

User-control and safetyU54CA244438 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2019 to 2022
$7.8M
Synthetic circuits that drive infiltration of therapeutic T cells into immunologically cold tumorsU01CA265697 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI EL-SAMAD, HANA, LIM, WENDELL A · 2021 to 2025
$2.9M
Molecular Biophysics Training GrantT32GM149436 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Aashish Manglik · 2023 to 2026
$1.6M
NCI NIH HHS U01 CA265697NCI NIH HHS U54 CA244438NIGMS NIH HHS T32 GM149436
6 · The paper itself

Abstract

Chimeric antigen receptor (CAR) T cells have made a tremendous impact in the clinic, but potent signaling through the CAR can be detrimental to treatment safety and efficacy. The use of protein degradation to control CAR signaling can address these issues in preclinical models. Existing strategies for regulating CAR stability rely on small molecules to induce systemic degradation. In contrast to small molecule regulation, genetic circuits offer a more precise method to control CAR signaling in an autonomous cell-by-cell fashion. Here, we describe a programmable protein degradation tool that adopts the framework of bioPROTACs, heterobifunctional proteins that are composed of a target recognition domain fused to a domain that recruits the endogenous ubiquitin proteasome system. We develop novel bioPROTACs that utilize a compact four-residue degron and demonstrate degradation of cytosolic and membrane protein targets using either a nanobody or synthetic leucine zipper as a protein binder. Our bioPROTACs exhibit potent degradation of CARs and can inhibit CAR signaling in primary human T cells. We demonstrate the utility of our bioPROTACs by constructing a genetic circuit to degrade the tyrosine kinase ZAP70 in response to recognition of a specific membrane-bound antigen. This circuit can disrupt CAR T cell signaling only in the presence of a specific cell population. These results suggest that bioPROTACs are powerful tools for expanding the CAR T cell engineering toolbox.

Indexed as

DegronsProteolysisReceptors, Chimeric AntigenSignal TransductionT-LymphocytesHEK293 CellsHumansProteasome Endopeptidase ComplexZAP-70 Protein-Tyrosine KinaseProteasome Endopeptidase ComplexReceptors, Chimeric AntigenZAP-70 Protein-Tyrosine KinaseCAR T cellsmammalian synthetic biologytargeted protein degradation

Identifiers

PMID38991546
PMCPMC11334183

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.