Evidence map›Paper›PMID 38990984›Full record

ArticlePLoS computational biology2024

Parameter estimation in a whole-brain network model of epilepsy: Comparison of parallel global optimization solvers.

David R Penas, Meysam Hashemi, Viktor K Jirsa, Julio R Banga

Abstract readComparative Study
In one paragraph

Article in PLoS computational biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. A guide to neuromodulation in drug-resistant epilepsy.Epileptic disorders : international epilepsy journal with videotape · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Precision non-invasive brain stimulation: anJournal of neural engineering · 2025
    Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

David R PenasComputational Biology Lab, MBG-CSIC (Spanish National Research Council), Pontevedra, Spain.
Meysam HashemiAix Marseille Univ, INSERM, INS, Inst Neurosci Syst, Marseille, France.
Viktor K JirsaAix Marseille Univ, INSERM, INS, Inst Neurosci Syst, Marseille, France.
Julio R BangaComputational Biology Lab, MBG-CSIC (Spanish National Research Council), Pontevedra, Spain.ORCID 0000-0002-4245-0320

Funding

European Union’s Horizon Europe Programme 101147319French National Research Agency (ANR) ANR-17-RHUS-0004Spanish Agencia Estatal de Investigacion PID2020-117271RB-C22
6 · The paper itself

Abstract

The Virtual Epileptic Patient (VEP) refers to a computer-based representation of a patient with epilepsy that combines personalized anatomical data with dynamical models of abnormal brain activities. It is capable of generating spatio-temporal seizure patterns that resemble those recorded with invasive methods such as stereoelectro EEG data, allowing for the evaluation of clinical hypotheses before planning surgery. This study highlights the effectiveness of calibrating VEP models using a global optimization approach. The approach utilizes SaCeSS, a cooperative metaheuristic algorithm capable of parallel computation, to yield high-quality solutions without requiring excessive computational time. Through extensive benchmarking on synthetic data, our proposal successfully solved a set of different configurations of VEP models, demonstrating better scalability and superior performance against other parallel solvers. These results were further enhanced using a Bayesian optimization framework for hyperparameter tuning, with significant gains in terms of both accuracy and computational cost. Additionally, we added a scalable uncertainty quantification phase after model calibration, and used it to assess the variability in estimated parameters across different problems. Overall, this study has the potential to improve the estimation of pathological brain areas in drug-resistant epilepsy, thereby to inform the clinical decision-making process.

Indexed as

AlgorithmsBayes TheoremBrainComputational BiologyElectroencephalographyEpilepsyModels, NeurologicalComputer SimulationHumansNerve Net

Identifiers

PMID38990984
PMCPMC11265693

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.