Evidence map›Paper›PMID 38990947›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.

Ian C Nova, Jonathan M Craig, Abhishek Mazumder, Andrew H Laszlo, Ian M Derrington, Matthew T Noakes, Henry Brinkerhoff, Shuya Yang, Hanif Vahedian-Movahed, Lingting Li and 6 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. RfaH licenses RNA polymerase for long-range transcription.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Ian C Nova *Department of Physics, University of Washington, Seattle, WA 98195.
Jonathan M Craig *Department of Physics, University of Washington, Seattle, WA 98195.ORCID 0000-0003-4791-5112
Abhishek MazumderDepartment of Chemistry and Chemical Biology, Rutgers University, Piscataway, NJ 08854.ORCID 0000-0002-9339-6256
Andrew H LaszloDepartment of Physics, University of Washington, Seattle, WA 98195.ORCID 0000-0002-7853-0533
Ian M DerringtonDepartment of Physics, University of Washington, Seattle, WA 98195.
Matthew T NoakesDepartment of Physics, University of Washington, Seattle, WA 98195.ORCID 0000-0001-5757-4302
Henry BrinkerhoffDepartment of Physics, University of Washington, Seattle, WA 98195.
Shuya YangDepartment of Chemistry and Chemical Biology, Rutgers University, Piscataway, NJ 08854.
Hanif Vahedian-MovahedDepartment of Chemistry and Chemical Biology, Rutgers University, Piscataway, NJ 08854.ORCID 0000-0002-4770-8247
Lingting LiKey Laboratory of Synthetic Biology, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.ORCID 0000-0001-5536-1581
Yu ZhangKey Laboratory of Synthetic Biology, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.
Jasmine L BowmanDepartment of Physics, University of Washington, Seattle, WA 98195.
Jesse R HuangDepartment of Physics, University of Washington, Seattle, WA 98195.ORCID 0000-0002-1998-3751
Jonathan W MountDepartment of Physics, University of Washington, Seattle, WA 98195.ORCID 0000-0001-5366-0449
Richard H EbrightDepartment of Chemistry and Chemical Biology, Rutgers University, Piscataway, NJ 08854.ORCID 0000-0001-8915-7140
Jens H GundlachDepartment of Physics, University of Washington, Seattle, WA 98195.

Funding

Nanopore sequencing of DNA with MspAR01HG005115 · NHGRI · UNIVERSITY OF WASHINGTON · PI GUNDLACH, JENS, LASZLO, ANDREW · 2009 to 2024
$14.0M
TRANSCRIPTION ACTIVATION BY CAPR01GM041376 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI RICHARD H. EBRIGHT · 1989 to 2026
$6.5M
BACTERIAL TRANSCRIPTION COMPLEXESR37GM041376 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI EBRIGHT, RICHARD H. · 2013 to 2022
$5.0M
CAS Leading Science Key Research Program QYZDB-SSWSMC005HHS | National Institutes of Health (NIH) GM041376HHS | NIH | National Human Genome Research Institute (NHGRI) HG005115National Natural science foundation of china 31670067National Natural science foundation of china 31822001NHGRI NIH HHS R01 HG005115NIGMS NIH HHS R01 GM041376NIGMS NIH HHS R37 GM041376
6 · The paper itself

Abstract

RNA polymerases (RNAPs) carry out the first step in the central dogma of molecular biology by transcribing DNA into RNA. Despite their importance, much about how RNAPs work remains unclear, in part because the small (3.4 Angstrom) and fast (~40 ms/nt) steps during transcription were difficult to resolve. Here, we used high-resolution nanopore tweezers to observe the motion of single

Indexed as

DNA-Directed RNA PolymerasesEscherichia coliNanoporesEscherichia coli ProteinsKineticsNucleotidesOptical TweezersTranscription, GeneticDNA-Directed RNA PolymerasesEscherichia coli ProteinsNucleotidesenzymologynanopore tweezerstranscriptiontranscription elongationtranscription pausing

Identifiers

PMID38990947
PMCPMC11260103

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.