Evidence map›Paper›PMID 38990837›Full record

ArticlePLoS genetics2024

Gene-vegetarianism interactions in calcium, estimated glomerular filtration rate, and testosterone identified in genome-wide analysis across 30 biomarkers.

Michael Francis, Kenneth E Westerman, Alisa K Manning, Kaixiong Ye

Abstract read
In one paragraph

Article in PLoS genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Michael FrancisInstitute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.ORCID https://orcid.org/0000-0002-1320-7161
Kenneth E WestermanClinical and Translational Epidemiology Unit, Mongan Institute, Massachusetts General Hospital, Boston, Massachusetts, United States of America.ORCID https://orcid.org/0000-0001-7619-1868
Alisa K ManningClinical and Translational Epidemiology Unit, Mongan Institute, Massachusetts General Hospital, Boston, Massachusetts, United States of America.
Kaixiong YeInstitute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.ORCID https://orcid.org/0000-0003-4658-7292

Funding

T32 Predoctoral training grant in geneticsT32GM007103 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI DYER, KELLY A · 1985 to 2021
$5.9M
Methods and Software for Large-Scale Gene-Environment Interaction StudiesR01HL145025 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI CHEN, HAN, MANNING, ALISA KNODLE · 2019 to 2023
$4.0M
Gene-Environment Interactions in Human Evolution and Complex TraitsR35GM143060 · NIGMS · UNIVERSITY OF GEORGIA · PI YE, KAIXIONG · 2021 to 2025
$1.9M
Improved detection of gene-diet interactions via longitudinal data, metabolomic proxies, and polygenic scoresK01DK133637 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Kenneth E Westerman · 2022 to 2026
$749k
NHLBI NIH HHS R01 HL145025NIDDK NIH HHS K01 DK133637NIGMS NIH HHS R35 GM143060NIGMS NIH HHS T32 GM007103
6 · The paper itself

Abstract

We examined the associations of vegetarianism with metabolic biomarkers using traditional and genetic epidemiology. First, we addressed inconsistencies in self-reported vegetarianism among UK Biobank participants by utilizing data from two dietary surveys to find a cohort of strict European vegetarians (N = 2,312). Vegetarians were matched 1:4 with nonvegetarians for non-genetic association analyses, revealing significant effects of vegetarianism in 15 of 30 biomarkers. Cholesterol measures plus vitamin D were significantly lower in vegetarians, while triglycerides were higher. A genome-wide association study revealed no genome-wide significant (GWS; 5×10-8) associations with vegetarian behavior. We performed genome-wide gene-vegetarianism interaction analyses for the biomarkers, and detected a GWS interaction impacting calcium at rs72952628 (P = 4.47×10-8). rs72952628 is in MMAA, a B12 metabolic pathway gene; B12 has major deficiency potential in vegetarians. Gene-based interaction tests revealed two significant genes, RNF168 in testosterone (P = 1.45×10-6) and DOCK4 in estimated glomerular filtration rate (eGFR) (P = 6.76×10-7), which have previously been associated with testicular and renal traits, respectively. These nutrigenetic findings indicate genotype can modify the associations between vegetarianism and health outcomes.

Indexed as

BiomarkersCalciumDiet, VegetarianGenome-Wide Association StudyGlomerular Filtration RateTestosteroneAdultAgedFemaleHumansMaleMiddle AgedPolymorphism, Single NucleotideUbiquitin-Protein LigasesVegetariansVitamin DBiomarkersCalciumTestosteroneUbiquitin-Protein LigasesVitamin D

Identifiers

PMID38990837
PMCPMC11239071

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.