Evidence map›Paper›PMID 38989890›Full record

ArticleG3 (Bethesda, Md.)2024

Impact of tRNA-induced proline-to-serine mistranslation on the transcriptome of Drosophila melanogaster.

Joshua R Isaacson, Matthew D Berg, William Yeung, Judit Villén, Christopher J Brandl, Amanda J Moehring

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Joshua R IsaacsonDepartment of Biology, Western University, London, Canada, N6A 5B7.ORCID 0000-0002-1323-0257
Matthew D BergDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-7924-9241
William YeungDepartment of Biology, Western University, London, Canada, N6A 5B7.
Judit VillénDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Christopher J BrandlDepartment of Biochemistry, Western University, London, Canada, N6A 5B7.
Amanda J MoehringDepartment of Biology, Western University, London, Canada, N6A 5B7.ORCID 0000-0002-8088-4007

Funding

Emergent properties of signaling network degradation that mediate homeostatic failure during agingR01AG056359 · NIA · UNIVERSITY OF WASHINGTON · PI KAEBERLEIN, MATT, VILLEN, JUDIT · 2017 to 2021
$2.9M
Towards a comprehensive roadmap of cellular signaling.R35GM119536 · NIGMS · UNIVERSITY OF WASHINGTON · PI VILLEN, JUDIT · 2016 to 2020
$2.2M
The role of phosphorylation in the cellular organization of the proteomeR35GM152061 · NIGMS · UNIVERSITY OF WASHINGTON · PI Judit Villen · 2024 to 2026
$1.3M
Using metabolomics to identify mechanisms of natural variation in agingR56AG049494 · NIA · UNIVERSITY OF WASHINGTON · PI PROMISLOW, DANIEL EDWARD, VILLEN, JUDIT · 2022 to 2022
$319k
Natural Sciences and Engineering Research Council of Canada RGPIN-2020-07046NIA NIH HHS R01 AG056359NIA NIH HHS R56 AG049494NIGMS NIH HHS R35 GM119536NIGMS NIH HHS R35 GM152061NIH HHS R01AG056359NSERC Canada Graduate ScholarshipNSERC Postgraduate ScholarshipUniversity of Western Ontario Medical & Health Science Research Board
6 · The paper itself

Abstract

Mistranslation is the misincorporation of an amino acid into a polypeptide. Mistranslation has diverse effects on multicellular eukaryotes and is implicated in several human diseases. In Drosophila melanogaster, a serine transfer RNA (tRNA) that misincorporates serine at proline codons (P→S) affects male and female flies differently. The mechanisms behind this discrepancy are currently unknown. Here, we compare the transcriptional response of male and female flies to P→S mistranslation to identify genes and cellular processes that underlie sex-specific differences. Both males and females downregulate genes associated with various metabolic processes in response to P→S mistranslation. Males downregulate genes associated with extracellular matrix organization and response to negative stimuli such as wounding, whereas females downregulate aerobic respiration and ATP synthesis genes. Both sexes upregulate genes associated with gametogenesis, but females also upregulate cell cycle and DNA repair genes. These observed differences in the transcriptional response of male and female flies to P→S mistranslation have important implications for the sex-specific impact of mistranslation on disease and tRNA therapeutics.

Indexed as

Drosophila melanogasterProlineProtein BiosynthesisSerineTranscriptomeAnimalsFemaleGene Expression RegulationMaleRNA, TransferRNA, Transfer, SerProlineRNA, TransferRNA, Transfer, SerSerineDrosophila melanogastermistranslationproteotoxicityRNA sequencingstress responsetranslationtRNA

Identifiers

PMID38989890
PMCPMC11373654

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.