Evidence map›Paper›PMID 38987455›Full record

ArticleNature structural & molecular biology2024

Resolving chaperone-assisted protein folding on the ribosome at the peptide level.

Thomas E Wales, Aleksandra Pajak, Alžběta Roeselová, Santosh Shivakumaraswamy, Steven Howell, Svend Kjær, F Ulrich Hartl, John R Engen, David Balchin

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Structures of protein folding intermediates on the ribosome.Nature structural & molecular biology · 2026
    Article
  5. Article
  6. Article
  7. HXMS: a standardized file format for HX-MS data.Bioinformatics (Oxford, England) · 2026
    Article
  8. Multivalent weak contacts shape chaperone-nascent protein interactions.bioRxiv : the preprint server for biology · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. HXMS: a standardized file format for HX/MS data.bioRxiv : the preprint server for biology · 2025
    Article
  17. Review
  18. Article
  19. Trigger factor accelerates nascent chain compaction and folding.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Thomas E Wales *Department of Chemistry & Chemical Biology, Northeastern University, Boston, MA, USA.ORCID http://orcid.org/0000-0001-6133-5689
Aleksandra Pajak *Protein Biogenesis Laboratory, The Francis Crick Institute, London, UK.
Alžběta RoeselováProtein Biogenesis Laboratory, The Francis Crick Institute, London, UK.
Santosh ShivakumaraswamyProtein Biogenesis Laboratory, The Francis Crick Institute, London, UK.
Steven HowellProteomics Science Technology Platform, The Francis Crick Institute, London, UK.
Svend KjærStructural Biology Science Technology Platform, The Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0001-9767-8683
F Ulrich HartlDepartment of Cellular Biochemistry, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID http://orcid.org/0000-0002-7941-135X
John R EngenDepartment of Chemistry & Chemical Biology, Northeastern University, Boston, MA, USA. j.engen@northeastern.edu.ORCID http://orcid.org/0000-0002-6918-9476
David BalchinProtein Biogenesis Laboratory, The Francis Crick Institute, London, UK. david.balchin@crick.ac.uk.ORCID http://orcid.org/0000-0002-5000-0995

Funding

Conformational Regulation and Therapeutic Targeting of Oncogenic KRASR01CA233978 · NCI · NORTHEASTERN UNIVERSITY · PI WALENSKY, LOREN DAVID, WALES, THOMAS EDWARD · 2020 to 2024
$2.4M
NCI NIH HHS R01 CA233978Wellcome Trust CC2025
6 · The paper itself

Abstract

Protein folding in vivo begins during synthesis on the ribosome and is modulated by molecular chaperones that engage the nascent polypeptide. How these features of protein biogenesis influence the maturation pathway of nascent proteins is incompletely understood. Here, we use hydrogen-deuterium exchange mass spectrometry to define, at peptide resolution, the cotranslational chaperone-assisted folding pathway of Escherichia coli dihydrofolate reductase. The nascent polypeptide folds along an unanticipated pathway through structured intermediates not populated during refolding from denaturant. Association with the ribosome allows these intermediates to form, as otherwise destabilizing carboxy-terminal sequences remain confined in the ribosome exit tunnel. Trigger factor binds partially folded states without disrupting their structure, and the nascent chain is poised to complete folding immediately upon emergence of the C terminus from the exit tunnel. By mapping interactions between the nascent chain and ribosomal proteins, we trace the path of the emerging polypeptide during synthesis. Our work reveals new mechanisms by which cellular factors shape the conformational search for the native state.

Indexed as

Escherichia coliEscherichia coli ProteinsMolecular ChaperonesProtein FoldingRibosomesTetrahydrofolate DehydrogenaseModels, MolecularPeptidesPeptidylprolyl IsomeraseProtein BiosynthesisProtein ConformationRibosomal ProteinsEscherichia coli ProteinsMolecular ChaperonesPeptidesPeptidylprolyl IsomeraseRibosomal ProteinsTetrahydrofolate Dehydrogenasetrigger factor, E coli

Identifiers

PMID38987455
PMCPMC11638072

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.