Evidence map›Paper›PMID 38987383›Full record

ArticleCommunications biology2024

Two-dimensional high-throughput on-cell screening of immunoglobulins against broad antigen repertoires.

Yakov A Lomakin, Leyla A Ovchinnikova, Stanislav S Terekhov, Samir S Dzhelad, Igor Yaroshevich, Ilgar Mamedov, Anastasia Smirnova, Tatiana Grigoreva, Igor E Eliseev, Ioanna N Filimonova and 13 more

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Yakov A LomakinShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia. yasha.l@bk.ru.ORCID 0000-0002-3514-5395
Leyla A OvchinnikovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Stanislav S TerekhovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Samir S DzheladShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Igor YaroshevichShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Ilgar MamedovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Anastasia SmirnovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Tatiana GrigorevaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Igor E EliseevShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Ioanna N FilimonovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Yuliana A MokrushinaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Victoria AbrikosovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Maria P RubtsovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Nikita N KostinShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.ORCID 0000-0001-9447-9961
Maria A SimonovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Tatiana V BobikShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Natalia L AleshenkoFederal State Budgetary Scientific Institution «Petrovsky National Research Centre of Surgery» (FSBSI «Petrovsky NRCS»), Moscow, Russia.
Alexander I AlekhinFederal State Budgetary Scientific Institution «Petrovsky National Research Centre of Surgery» (FSBSI «Petrovsky NRCS»), Moscow, Russia.
Vitali M BoitsovSaint Petersburg National Research Academic University of the Russian Academy of Sciences, 194021, Saint Petersburg, Russia.
Hongkai ZhangCollege of Life Science, Nankai University, Tianjin, People's Republic of China.
Ivan V SmirnovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.
Yuri P RubtsovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia.ORCID 0000-0001-9175-3013
Alexander G GabibovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997, Moscow, Russia. gabibov@gmail.com.ORCID 0000-0001-8665-3288

Funding

National Natural Science Foundation of China (National Science Foundation of China) 82261138553Russian Science Foundation (RSF) 23-44-00043
6 · The paper itself

Abstract

Identifying high-affinity antibodies in human serum is challenging due to extremely low number of circulating B cells specific to the desired antigens. Delays caused by a lack of information on the immunogenic proteins of viral origin hamper the development of therapeutic antibodies. We propose an efficient approach allowing for enrichment of high-affinity antibodies against pathogen proteins with simultaneous epitope mapping, even in the absence of structural information about the pathogenic immunogens. To screen therapeutic antibodies from blood of recovered donors, only pathogen transcriptome is required to design an antigen polypeptide library, representing pathogen proteins, exposed on the bacteriophage surface. We developed a two-dimensional screening approach enriching lentiviral immunoglobulin libraries from the convalescent or vaccinated donors against bacteriophage library expressing the overlapping set of polypeptides covering the spike protein of SARS-CoV-2. This platform is suitable for pathogen-specific immunoglobulin enrichment and allows high-throughput selection of therapeutic human antibodies.

Indexed as

COVID-19High-Throughput Screening AssaysPeptide LibrarySARS-CoV-2Antibodies, ViralEpitope MappingHumansImmunoglobulinsSpike Glycoprotein, CoronavirusAntibodies, ViralImmunoglobulinsPeptide LibrarySpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID38987383
PMCPMC11237129

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.