Evidence map›Paper›PMID 38987269›Full record

ArticleNature communications2024

Robust trigger wave speed in Xenopus cytoplasmic extracts.

Jo-Hsi Huang, Yuping Chen, William Y C Huang, Saman Tabatabaee, James E Ferrell

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Review
  3. Geometrical compartmentalization of trigger waves.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Jo-Hsi Huang *Department of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA. johsi@stanford.edu.ORCID 0000-0003-1221-7285
Yuping Chen *Department of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
William Y C HuangDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Saman TabatabaeeDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID 0009-0001-1332-3314
James E FerrellDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA. james.ferrell@stanford.edu.ORCID 0000-0003-4767-3926

Funding

Cytoplasmic organization and systems-level function in Xenopus extractsR35GM131792 · NIGMS · STANFORD UNIVERSITY · PI JAMES E. FERRELL · 2019 to 2026
$5.6M
Reconstructing and deconstructing intracellular signaling at the membrane-cytosol interfaceR00GM143481 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Yuan-Chi Huang · 2025 to 2026
$498k
Reconstructing and deconstructing intracellular signaling at the membrane-cytosol interfaceK99GM143481 · NIGMS · STANFORD UNIVERSITY · PI HUANG, YUAN-CHI · 2022 to 2023
$200k
NIGMS NIH HHS K99 GM143481NIGMS NIH HHS R00 GM143481NIGMS NIH HHS R35 GM131792U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM131792U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM143481
6 · The paper itself

Abstract

Self-regenerating trigger waves can spread rapidly through the crowded cytoplasm without diminishing in amplitude or speed, providing consistent, reliable, long-range communication. The macromolecular concentration of the cytoplasm varies in response to physiological and environmental fluctuations, raising the question of how or if trigger waves can robustly operate in the face of such fluctuations. Using Xenopus extracts, we find that mitotic and apoptotic trigger wave speeds are remarkably invariant. We derive a model that accounts for this robustness and for the eventual slowing at extremely high and low cytoplasmic concentrations. The model implies that the positive and negative effects of cytoplasmic concentration (increased reactant concentration vs. increased viscosity) are nearly precisely balanced. Accordingly, artificially maintaining a constant cytoplasmic viscosity during dilution abrogates this robustness. The robustness in trigger wave speeds may contribute to the reliability of the extremely rapid embryonic cell cycle.

Indexed as

CytoplasmMitosisXenopus laevisAnimalsApoptosisCell CycleCell ExtractsModels, BiologicalViscosityXenopusCell Extracts

Identifiers

PMID38987269
PMCPMC11237086

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.