Evidence map›Paper›PMID 38985282›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Transcriptomic Analysis During the Induction of Somatic Embryogenesis in Coffea canephora.

Ana O Quintana-Escobar, Víctor M Loyola-Vargas

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Ana O Quintana-EscobarUnidad de Biología Integrativa, Centro de Investigación Científica de Yucatán, Chuburna, Merida, CP, Mexico.
Víctor M Loyola-VargasUnidad de Biología Integrativa, Centro de Investigación Científica de Yucatán, Chuburna, Merida, CP, Mexico. vmloyola@cicy.mx.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Omic tools have changed the way of doing research in experimental biology. The somatic embryogenesis (SE) study has not been immune to this benefit. The transcriptomic tools have been used to compare the genes expressed during the induction of SE with the genes expressed in zygotic embryogenesis or to compare the development of the different stages embryos go through. It has also been used to compare the expression of genes during the development of calli from which SE is induced, as well as many other applications. The protocol described here is employed in our laboratory to extract RNA and generate several transcriptomes for the study of SE on Coffea canephora.

Indexed as

CoffeaGene Expression ProfilingGene Expression Regulation, PlantPlant Somatic Embryogenesis TechniquesTranscriptomeGene Expression Regulation, DevelopmentalSeedsCell differentiationCoffea canephoraSomatic embryogenesisTranscriptome

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.