Evidence map›Paper›PMID 38984547›Full record

ArticleAmerican journal of physical medicine & rehabilitation2024

Gene Expression Profiles Perturbed by Injury to the Mouse Intervertebral Disc.

Ken Chen, Zuozhen Tian, Huan Wang, Ling Qin, Motomi Enomoto-Iwamoto, Yejia Zhang

Abstract read
In one paragraph

Article in American journal of physical medicine & rehabilitation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ken ChenFrom the Departments of Orthopedic Surgery (KC, HW, LQ) and Physical Medicine & Rehabilitation (ZT, YZ), University of Pennsylvania, Philadelphia, Pennsylvania; Department of Orthopedics, University of Maryland School of Medicine, Baltimore, Maryland (ME-I); Department of Orthopedics, Xiangya Hospital, Central South University, Changsha, Hunan, P.R. China (KC); Department of Orthopedic Surgery, Tongji Hospital, Huazhong University of Science and Technology, Wuhan, P.R. China (HW); and Section of Rehabilitation Medicine, Corporal Michael J. Crescenz Veterans Affairs Medical Center, Philadelphia, Pennsylvania (YZ).
Zuozhen Tian
Huan Wang
Ling Qin
Motomi Enomoto-Iwamoto

Funding

Overall: Resource-based Center for Musculoskeletal Disorders Research (Overall Application)P30AR069619 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI LOUIS J SOSLOWSKY · 2016 to 2026
$9.1M
Inhibition of TNF-alpha Signaling to Reduce Intervertebral Disc InflammationR21AR078386 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI ZHANG, YEJIA · 2021 to 2022
$383k
ADAM8 in Intervertebral Disc DegenerationR21AR071623 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI ZHANG, YEJIA · 2018 to 2019
$364k
NIAMS NIH HHS P30 AR069619NIAMS NIH HHS R21 AR071623NIAMS NIH HHS R21 AR078386
6 · The paper itself

Abstract

objectivesBack pain subsequent to intervertebral disc injury is a common clinical problem. Previous work examining early molecular changes post injury mainly used a candidate marker approach. In this study, gene expression in the injured and intact mouse tail intervertebral discs was determined with a nonbiased whole transcriptome approach.

designMouse tail intervertebral disc injury was induced by a needle puncture. Whole murine transcriptome was determined by RNASeq. Transcriptomes of injured intervertebral discs were compared with those of intact controls by bioinformatic methods.

resultsAmong the 18,078 murine genes examined, 592 genes were differentially expressed ( P.adj < 0.01). Novel genes upregulated in injured compared with intact intervertebral discs included Chl1, Lum , etc. Ontology study of upregulated genes revealed that leukocyte migration was the most enriched biological process, and network analysis showed that Tnfa had the most protein-protein interactions. Novel downregulated genes in the injured intervertebral discs included 4833412C05Rik , Myoc , etc . The most enriched downregulated pathways were related to cytoskeletal organization.

conclusionsNovel genes highly regulated after disc injury were identified with an unbiased approach; they may serve as biomarkers of injury and response to treatments in future experiments. Enriched biological pathways and molecules with high numbers of connections may be targets for treatments after injury.

Indexed as

Intervertebral DiscTranscriptomeAnimalsDisease Models, AnimalGene Expression ProfilingMiceMice, Inbred C57BLUp-Regulation

Identifiers

PMID38984547
PMCPMC11647451

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.