Evidence map›Paper›PMID 38983716›Full record

ArticleTransboundary and emerging diseases2023

Canine Parvovirus 2C Identified in Dog Feces from Poop Bags Collected from Outdoor Waste Bins in Arizona USA, June 2022.

Temitope O C Faleye, Erin M Driver, Devin A Bowes, Abriana Smith, Nicole A Kaiser, Jillian M Wright, Ainsley R Chapman, Rolf U Halden, Arvind Varsani, Matthew Scotch

Abstract read
In one paragraph

Article in Transboundary and emerging diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Temitope O C FaleyeThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, Tempe, AZ, USA.ORCID 0000-0001-7706-9493
Erin M DriverThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, Tempe, AZ, USA.
Devin A BowesThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, Tempe, AZ, USA.
Abriana SmithThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, Tempe, AZ, USA.
Nicole A KaiserThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, Tempe, AZ, USA.
Jillian M WrightThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, Tempe, AZ, USA.
Ainsley R ChapmanThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, Tempe, AZ, USA.
Rolf U HaldenThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, Tempe, AZ, USA.
Arvind VarsaniBiodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, USA.
Matthew ScotchThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, Tempe, AZ, USA.ORCID 0000-0001-5100-9724

Funding

Bioinformatics Framework for Wastewater-based Surveillance of Infectious DiseasesU01LM013129 · NLM · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI HALDEN, ROLF U, SCOTCH, MATTHEW · 2020 to 2022
$3.3M
NLM NIH HHS U01 LM013129
6 · The paper itself

Abstract

Canine parvoviruses (CPVs) are a major cause of morbidity and mortality in dogs. However, surveillance has been largely limited to clinically manifest cases, resulting in a dearth of CPV genomic information on virus type, abundance, and diversity, limiting our understanding of its evolutionary dynamics. We tested the feasibility of using dog feces in poop bags collected from outdoor waste bins as a source for environmental surveillance of CPV. After polymerase chain reaction, long-read sequencing, and bioinformatics, we identified that CPV-2c was present in Arizona, USA, in June 2022 and documented variants with amino acid substitutions 530E and 101K in NS1 and NS2, respectively. Based on publicly available sequence data in GenBank as of January 2023, the CPV genome described here represents the only CPV genome described in the USA from the 2022 season, despite news of CPV outbreak-associated fatalities in dogs in the USA. This highlights the need for more studies that document CPV complete or near complete genomes, as well as experimental studies, to further our understanding of its evolutionary process.

Identifiers

PMID38983716
PMCPMC11232495

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.