Evidence map›Paper›PMID 38982475›Full record

ArticleMalaria journal2024

Two decades of molecular surveillance in Senegal reveal rapid changes in known drug resistance mutations over time.

Yaye D Ndiaye, Wesley Wong, Julie Thwing, Stephen F Schaffner, Katelyn Vendrely Brenneman, Abdoulaye Tine, Mamadou A Diallo, Awa B Deme, Mouhamad Sy, Amy K Bei and 33 more

Abstract read
In one paragraph

Article in Malaria journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. The Global Landscape ofPathogens (Basel, Switzerland) · 2026
    Pooled it
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

43 authors.

Yaye D Ndiaye *International Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Wesley Wong *Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, 665 Huntington Ave, Boston, MA, 02115, USA.
Julie ThwingMalaria Branch, Division of Parasitic Diseases and Malaria, Global Health Center, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Stephen F SchaffnerBroad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA, 02142, USA.
Katelyn Vendrely BrennemanDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, 665 Huntington Ave, Boston, MA, 02115, USA.
Abdoulaye TineInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Mamadou A DialloInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Awa B DemeInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Mouhamad SyInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Amy K BeiYale School of Public Health, 60 College St, New Haven, CT, 06510, USA.
Alphonse B ThiawDepartment of Biochemistry and Functional Genomics, Sherbrooke University, 2500 Bd de L'Universite, Sherbrooke, QC, J1K 2R1, Canada.
Rachel DanielsRNA Therapeutics Institute, UMass Chan Medical School, 368 Plantation Street, Worcester, MA, 01605, USA.
Tolla NdiayeInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Amy GayeInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Ibrahima M NdiayeInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Mariama ToureInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Nogaye GadiagaInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Aita SeneInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Djiby SowInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Mamane N GarbaInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Mamadou S YadeInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Baba DieyeInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Khadim DiongueInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Daba ZoumarouInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Aliou NdiayeInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Jules F GomisInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Fatou B FallNational Malaria Control Programme (NMCP), 25270, Dakar, Senegal.
Medoune NdiopNational Malaria Control Programme (NMCP), 25270, Dakar, Senegal.
Ibrahima DialloNational Malaria Control Programme (NMCP), 25270, Dakar, Senegal.
Doudou SeneNational Malaria Control Programme (NMCP), 25270, Dakar, Senegal.
Bronwyn MacinnisBroad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA, 02142, USA.
Mame C SeckInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Mouhamadou NdiayeInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Bassirou NgomInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Younouss DiedhiouInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Amadou M MbayeInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Lamine NdiayeInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Ngayo SyService de Lutte Antiparasitaire (SLAP), Thiès, Senegal.
Aida S BadianeInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.
Daniel L HartlDepartment of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA, 02138, USA.
Dyann F WirthDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, 665 Huntington Ave, Boston, MA, 02115, USA.
Sarah K VolkmanDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, 665 Huntington Ave, Boston, MA, 02115, USA. svolkman@hsph.harvard.edu.
Daouda NdiayeInternational Research Training Center On Genomics and Health Surveillance (CIGASS), Cheikh Anta Diop University, 16477, Dakar, Senegal.

Funding

Sequencing and Genomics CoresU19AI089696 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI VOLKMAN, SARAH KAY · 2010 to 2016
$10.6M
Defining the resistome in P. falciparum: evolution and mechanismR01AI169892 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Daniel E. Goldberg, Elizabeth A Winzeler · 2023 to 2026
$4.4M
Bill and Melinda Gates Foundation Investment ID 0PP1200177 and Investment ID INV-004036NIAID NIH HHS R01 AI169892NIAID NIH HHS U19 AI089696NIH/ICEMR U19AI089696
6 · The paper itself

Abstract

backgroundDrug resistance in Plasmodium falciparum is a major threat to malaria control efforts. Pathogen genomic surveillance could be invaluable for monitoring current and emerging parasite drug resistance.

methodsData from two decades (2000-2020) of continuous molecular surveillance of P. falciparum parasites from Senegal were retrospectively examined to assess historical changes in malaria drug resistance mutations. Several known drug resistance markers and their surrounding haplotypes were profiled using a combination of single nucleotide polymorphism (SNP) molecular surveillance and whole genome sequence based population genomics.

resultsThis dataset was used to track temporal changes in drug resistance markers whose timing correspond to historically significant events such as the withdrawal of chloroquine (CQ) and the introduction of sulfadoxine-pyrimethamine (SP) in 2003. Changes in the mutation frequency at Pfcrt K76T and Pfdhps A437G coinciding with the 2014 introduction of seasonal malaria chemoprevention (SMC) in Senegal were observed. In 2014, the frequency of Pfcrt K76T increased while the frequency of Pfdhps A437G declined. Haplotype-based analyses of Pfcrt K76T showed that this rapid increase was due to a recent selective sweep that started after 2014. DISCUSSION (CONCLUSION): The rapid increase in Pfcrt K76T is troubling and could be a sign of emerging amodiaquine (AQ) resistance in Senegal. Emerging AQ resistance may threaten the future clinical efficacy of artesunate-amodiaquine (ASAQ) and AQ-dependent SMC chemoprevention. These results highlight the potential of molecular surveillance for detecting rapid changes in parasite populations and stress the need to monitor the effectiveness of AQ as a partner drug for artemisinin-based combination therapy (ACT) and for chemoprevention.

Indexed as

AntimalarialsDrug ResistanceMutationPlasmodium falciparumHaplotypesHumansMalaria, FalciparumMembrane Transport ProteinsPolymorphism, Single NucleotideProtozoan ProteinsRetrospective StudiesSenegalAntimalarialsMembrane Transport ProteinsProtozoan Proteins

Identifiers

PMID38982475
PMCPMC11234717

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.