Evidence map›Paper›PMID 38981471›Full record

ArticleCell stem cell2024

A human pluripotent stem cell-based somitogenesis model using microfluidics.

Yue Liu, Yung Su Kim, Xufeng Xue, Yuchuan Miao, Norio Kobayashi, Shiyu Sun, Robin Zhexuan Yan, Qiong Yang, Olivier Pourquié, Jianping Fu

Abstract read
In one paragraph

Article in Cell stem cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Prepatterned Tissue Stiffness Gradient Controls Organ shape and size.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. Bioengineering gradients for controlled embryo and organ modeling.Current opinion in biomedical engineering · 2025
    Article
  6. Review
  7. Review
  8. Article
  9. Pluripotent cell states and fates in human embryo models.Development (Cambridge, England) · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Yue LiuDepartment of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA. Electronic address: umliu@umich.edu.
Yung Su KimDepartment of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.
Xufeng XueDepartment of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.
Yuchuan MiaoDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA; Department of Pathology, Brigham and Women's Hospital, Boston, MA 02115, USA.
Norio KobayashiDepartment of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.
Shiyu SunDepartment of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.
Robin Zhexuan YanDepartment of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.
Qiong YangDepartment of Biophysics, University of Michigan, Ann Arbor, MI 48109, USA; Department of Physics, University of Michigan, Ann Arbor, MI 48109, USA.
Olivier PourquiéDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA; Department of Pathology, Brigham and Women's Hospital, Boston, MA 02115, USA; Harvard Stem Cell Institute, Harvard University, Cambridge, MA 02138, USA.
Jianping FuDepartment of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA; Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, USA; Department of Cell & Developmental Biology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. Electronic address: jpfu@umich.edu.

Funding

Role of Energy Metabolism in Patterning the Vertebrate Musculo-Skeletal AxisR01HD085121 · NICHD · BRIGHAM AND WOMEN'S HOSPITAL · PI OLIVIER POURQUIE · 2016 to 2026
$6.8M
A Fully Patterned Human Neural Tube Model Using MicrofluidicsR01NS129850 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Jianping Fu · 2023 to 2026
$2.1M
Synthetic microfluidic synthesis of spinal cord tissues from human pluripotent stem cellsR21NS113518 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FU, JIANPING · 2019 to 2019
$422k
Quantitative characterization of a vertebrate segmentation clock response to biomechanical signals during zebrafish somitogenesisR21HD105126 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FU, JIANPING, YANG, QIONG · 2021 to 2022
$406k
Amnion membrane organ-on-chip for modeling intra-amniotic infectionR21HD105192 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FU, JIANPING, ZHENG, YI · 2022 to 2023
$397k
Modeling NDE1 function in dysregulated brain development using a microfluidic CNS modelR21NS127983 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FU, JIANPING, REINER, ORLY · 2023 to 2024
$371k
Controlled generation of human embryoids using optogeneticsR21HD109635 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FU, JIANPING · 2022 to 2023
$336k
NICHD NIH HHS R01 HD085121NICHD NIH HHS R21 HD105126NICHD NIH HHS R21 HD105192NICHD NIH HHS R21 HD109635NINDS NIH HHS R01 NS129850NINDS NIH HHS R21 NS113518NINDS NIH HHS R21 NS127983
6 · The paper itself

Abstract

Emerging human pluripotent stem cell (hPSC)-based embryo models are useful for studying human embryogenesis. Particularly, there are hPSC-based somitogenesis models using free-floating culture that recapitulate somite formation. Somitogenesis in vivo involves intricately orchestrated biochemical and biomechanical events. However, none of the current somitogenesis models controls biochemical gradients or biomechanical signals in the culture, limiting their applicability to untangle complex biochemical-biomechanical interactions that drive somitogenesis. Herein, we develop a human somitogenesis model by confining hPSC-derived presomitic mesoderm (PSM) tissues in microfabricated trenches. Exogenous microfluidic morphogen gradients imposed on the PSM tissues cause axial patterning and trigger spontaneous rostral-to-caudal somite formation. A mechanical theory is developed to explain the size dependency between somites and the PSM. The microfluidic somitogenesis model is further exploited to reveal regulatory roles of cellular and tissue biomechanics in somite formation. This study presents a useful microengineered, hPSC-based model for understanding the biochemical and biomechanical events that guide somite formation.

Indexed as

MicrofluidicsModels, BiologicalPluripotent Stem CellsSomitesCell DifferentiationEmbryonic DevelopmentHumansMesodermbiomechanicsembryo modelhuman developmenthuman pluripotent stem cellsin vitro modelingmicrofluidicssomitogenesis

Identifiers

PMID38981471
PMCPMC11890119

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.