Evidence map›Paper›PMID 38980845›Full record

ArticlePloS one2024

Long-term antibiotic exposure landscapes and resistant Escherichia coli colonization in a densely populated setting.

Eric Ng'eno, Marlon E Cobos, Samuel Kiplangat, Robert Mugoh, Alice Ouma, Godfrey Bigogo, Sylvia Omulo, A Townsend Peterson

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Eric Ng'enoCentre for Global Health Research, Kenya Medical Research Institute, Nairobi, Kenya.ORCID 0000-0002-0977-1579
Marlon E CobosDepartment of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, KS, United States of America.
Samuel KiplangatCentre for Global Health Research, Kenya Medical Research Institute, Nairobi, Kenya.
Robert MugohWashington State University Global Health-Kenya, Nairobi, Kenya.
Alice OumaCentre for Global Health Research, Kenya Medical Research Institute, Nairobi, Kenya.
Godfrey BigogoCentre for Global Health Research, Kenya Medical Research Institute, Nairobi, Kenya.
Sylvia OmuloWashington State University Global Health-Kenya, Nairobi, Kenya.
A Townsend PetersonDepartment of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, KS, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antibiotic exposure is associated with resistant bacterial colonization, but this relationship can be obscured in community settings owing to horizontal bacterial transmission and broad distributions. Locality-level exposure estimates considering inhabitants' length of stay, exposure history, and exposure conditions of areas nearby could clarify these relationships. We used prescription data filled during 2010-2015 for 23 antibiotic types for members of georeferenced households in a population-based infectious disease surveillance platform. For each antibiotic and locality, we generated exposure estimates, expressed in defined daily doses (DDD) per 1000 inhabitant days of observation (IDO). We also estimated relevant environmental parameters, such as the distance of each locality to water, sanitation, and other amenities. We used data on ampicillin, ceftazidime, and trimethoprim-and-sulfamethoxazole resistant Escherichia coli colonization from stool cultures of asymptomatic individuals in randomly selected households. We tested exposure-colonization associations using permutation analysis of variance and logistic generalized linear mixed-effect models. Overall, exposure was highest for trimethoprim-sulfamethoxazole (1.8 DDD per 1000 IDO), followed by amoxicillin (0.7 DDD per 1000 IDO). Of 1,386 unique household samples from 195 locations tested between September 2015 and January 2016, 90%, 85% and 4% were colonized with E. coli resistant to trimethoprim and sulfamethoxazole, ampicillin, and ceftazidime, respectively. Ceftazidime-resistant E. coli colonization was common in areas with increased trimethoprim-sulfamethoxazole, cloxacillin, and erythromycin exposure. No association with any of the physical environmental variables was observed. We did not detect relationships between distribution patterns of ampicillin or trimethoprim-and-sulfamethoxazole resistant E. coli colonization and the risk factors assessed. Appropriate temporal and spatial scaling of raw antibiotic exposure data to account for evolution and ecological contexts of antibiotic resistance could clarify exposure-colonization relationships in community settings and inform community stewardship program.

Indexed as

Anti-Bacterial AgentsEscherichia coliEscherichia coli InfectionsAdolescentAdultAmpicillinCeftazidimeChildChild, PreschoolDrug Resistance, BacterialFemaleHumansInfantMaleMiddle AgedTrimethoprim, Sulfamethoxazole Drug CombinationAmpicillinAnti-Bacterial AgentsCeftazidimeTrimethoprim, Sulfamethoxazole Drug Combination

Identifiers

PMID38980845
PMCPMC11232973

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.