Evidence map›Paper›PMID 38980715›Full record

ArticleJournal of proteome research2024

The Spatial Extracellular Proteomic Tumor Microenvironment Distinguishes Molecular Subtypes of Hepatocellular Carcinoma.

Jade K Macdonald, Harrison B Taylor, Mengjun Wang, Andrew Delacourt, Christin Edge, David N Lewin, Naoto Kubota, Naoto Fujiwara, Fahmida Rasha, Cesia A Marquez and 11 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Understanding and targeting the tumour matrisome.Nature reviews. Clinical oncology · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Jade K MacdonaldDepartment of Cell and Molecular Pharmacology, Medical University of South Carolina, Charleston, South Carolina 29425, United States.ORCID 0000-0002-8182-1366
Harrison B TaylorDepartment of Cell and Molecular Pharmacology, Medical University of South Carolina, Charleston, South Carolina 29425, United States.
Mengjun WangDepartment of Cell and Molecular Pharmacology, Medical University of South Carolina, Charleston, South Carolina 29425, United States.
Andrew DelacourtDepartment of Cell and Molecular Pharmacology, Medical University of South Carolina, Charleston, South Carolina 29425, United States.
Christin EdgeDepartment of Cell and Molecular Pharmacology, Medical University of South Carolina, Charleston, South Carolina 29425, United States.
David N LewinDepartment of Cell and Molecular Pharmacology, Medical University of South Carolina, Charleston, South Carolina 29425, United States.
Naoto KubotaLiver Tumor Translational Research Program, Simmons Comprehensive Cancer Center, Division of Digestive and Liver Diseases, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, United States.
Naoto FujiwaraLiver Tumor Translational Research Program, Simmons Comprehensive Cancer Center, Division of Digestive and Liver Diseases, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, United States.
Fahmida RashaLiver Tumor Translational Research Program, Simmons Comprehensive Cancer Center, Division of Digestive and Liver Diseases, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, United States.
Cesia A MarquezLiver Tumor Translational Research Program, Simmons Comprehensive Cancer Center, Division of Digestive and Liver Diseases, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, United States.
Atsushi OnoDepartment of Gastroenterology, Graduate School of Biomedical & Health Sciences, Hiroshima University, Hiroshima 734-8553, Japan.
Shiro OkaDepartment of Gastroenterology, Graduate School of Biomedical & Health Sciences, Hiroshima University, Hiroshima 734-8553, Japan.
Kazuaki ChayamaHiroshima Institute of Life Sciences, Hiroshima 734-8553, Japan.
Sara LewisDepartment of Radiology, Icahn School of Medicine at Mount Sinai, New York, New York 10029, United States.
Bachir TaouliDepartment of Radiology, Icahn School of Medicine at Mount Sinai, New York, New York 10029, United States.
Myron SchwartzDepartment of Radiology, Icahn School of Medicine at Mount Sinai, New York, New York 10029, United States.
M Isabel FielDepartment of Radiology, Icahn School of Medicine at Mount Sinai, New York, New York 10029, United States.
Richard R DrakeDepartment of Cell and Molecular Pharmacology, Medical University of South Carolina, Charleston, South Carolina 29425, United States.ORCID 0000-0002-6285-6440
Yujin HoshidaLiver Tumor Translational Research Program, Simmons Comprehensive Cancer Center, Division of Digestive and Liver Diseases, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, United States.
Anand S MehtaDepartment of Cell and Molecular Pharmacology, Medical University of South Carolina, Charleston, South Carolina 29425, United States.ORCID 0000-0002-9846-9389
Peggi M AngelDepartment of Cell and Molecular Pharmacology, Medical University of South Carolina, Charleston, South Carolina 29425, United States.ORCID 0000-0002-4436-555X

Funding

UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Kathryn Ann O'Donnell · 2010 to 2026
$53.7M
Translational Science Laboratory Shared ResourceP30CA138313 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI John J Lemasters · 2009 to 2026
$42.7M
SOUTH CAROLINA COBRE IN OXIDANTS, REDOX BALANCE AND STRESS SIGNALINGP20GM103542 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BALL, LAUREN ELIZABETH · 2012 to 2020
$20.2M
Proteomics CoreP30DK123704 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI Garth R Swanson · 2020 to 2026
$8.8M
Cellular, Biochemical and Molecular Sciences Training Program: Developing the skills and expertise needed for a changing biomedical landscapeT32GM132055 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI Amy D Bradshaw, John P O'Bryan · 2019 to 2026
$3.9M
Precision Risk Stratification and Screening for HCC among Patients with Indeterminate Liver NodulesU01CA283935 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI HOSHIDA, YUJIN, SINGAL, AMIT · 2023 to 2025
$3.9M
Deciphering the Glycan Code in Human Alzheimer’s Disease BrainR01AG078702 · NIA · UNIVERSITY OF KENTUCKY · PI Peggi M Angel, Sean Curtis Bendall · 2022 to 2026
$3.8M
Trial of Statins for Chemoprevention in Hepatocellular CarcinomaR01CA255621 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI CHUNG, RAYMOND T, HOSHIDA, YUJIN · 2021 to 2025
$3.6M
Reverse-engineering precision liver cancer chemopreventionR01CA233794 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI HOSHIDA, YUJIN · 2019 to 2023
$3.5M
Non-invasive etiology-adjusted precision liver cancer risk predictionR01CA292930 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI HOSHIDA, YUJIN · 2025 to 2025
$2.9M
Glycopathology of HCC: identification of the source cells of serum fucosylationU01CA226052 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DRAKE, RICHARD R., HOSHIDA, YUJIN · 2019 to 2023
$2.8M
Collagen Sequence Variants in Racial Disparities of Breast CancerR01CA253460 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI ANGEL, PEGGI M · 2020 to 2024
$2.6M
NCI NIH HHS P30 CA138313NCI NIH HHS P30 CA142543NCI NIH HHS R01 CA233794NCI NIH HHS R01 CA253460NCI NIH HHS R01 CA255621NCI NIH HHS R01 CA282178NCI NIH HHS R01 CA292930NCI NIH HHS R21 CA263464NCI NIH HHS U01 CA226052NCI NIH HHS U01 CA283935NCI NIH HHS U01 CA288375NIA NIH HHS R01 AG078702NIDDK NIH HHS P30 DK123704NIGMS NIH HHS P20 GM103542NIGMS NIH HHS T32 GM132055NIH HHS S10 OD010731NIH HHS S10 OD025126NIH HHS S10 OD030212
6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) mortality rates continue to increase faster than those of other cancer types due to high heterogeneity, which limits diagnosis and treatment. Pathological and molecular subtyping have identified that HCC tumors with poor outcomes are characterized by intratumoral collagenous accumulation. However, the translational and post-translational regulation of tumor collagen, which is critical to the outcome, remains largely unknown. Here, we investigate the spatial extracellular proteome to understand the differences associated with HCC tumors defined by Hoshida transcriptomic subtypes of poor outcome (Subtype 1; S1;

Indexed as

Carcinoma, HepatocellularLiver NeoplasmsProteomicsTumor MicroenvironmentChromatography, LiquidCollagen Type IHumansMachine LearningProteomeTandem Mass SpectrometryCollagen Type IProteomecancercollagenextracellular matrixhepatocellular carcinomamass spectrometry imagingmicroenvironmentpost-translational modificationproline hydroxylationproteomics

Identifiers

PMID38980715
PMCPMC11385377

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.