Evidence map›Paper›PMID 38980039›Full record

ArticlemBio2024

Genomic characterization of the bacterial phylum

Lei Su, Ian P G Marshall, Andreas P Teske, Huiqiang Yao, Jiangtao Li

Abstract read
In one paragraph

Article in mBio, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lei SuState Key Laboratory of Marine Geology, Tongji University, Shanghai, China.ORCID 0000-0002-8910-4222
Ian P G MarshallDepartment of Biology, Center for Electromicrobiology (CEM), Section for Microbiology, Aarhus University, Aarhus, Denmark.
Andreas P TeskeDepartment of Earth, Marine and Environmental Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Huiqiang YaoMLR Key Laboratory of Marine Mineral Resources, Guangzhou Marine Geological Survey, Guangzhou, China.
Jiangtao LiState Key Laboratory of Marine Geology, Tongji University, Shanghai, China.ORCID 0000-0001-9225-6748

Funding

MOST | National Key Research and Development Program of China (NKPs) 2021YFF0501301MOST | National Natural Science Foundation of China (NSFC) 42072333NSF-OCE OCE-0647633Shanghai Pilot Program for Basic Research
6 · The paper itself

Abstract

The microbial communities of marine seep sediments contain unexplored physiological and phylogenetic diversity. Here, we examined 30 bacterial metagenome-assembled genomes (MAGs) from cold seeps in the South China Sea, the Indian Ocean, the Scotian Basin, and the Gulf of Mexico, as well as from deep-sea hydrothermal sediments in the Guaymas Basin, Gulf of California. Phylogenetic analyses of these MAGs indicate that they form a distinct phylum-level bacterial lineage, which we propose as a new phylum, IMPORTANCE: The newly discovered bacterial phylum

Indexed as

BacteriaGenome, BacterialGeologic SedimentsMetagenomeMicrobiotaPhylogenyMetagenomicsSeawaterbacteriaCandidatus Effluviviacotacold seepglobal distribution

Identifiers

PMID38980039
PMCPMC11323493

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.