Evidence map›Paper›PMID 38979488›Full record

ArticleArXiv2024

A principled framework to assess the information-theoretic fitness of brain functional sub-circuits.

Duy Duong-Tran, Nghi Nguyen, Shizhuo Mu, Jiong Chen, Jingxuan Bao, Frederick Xu, Sumita Garai, Jose Cadena-Pico, Alan David Kaplan, Tianlong Chen and 3 more

Abstract readPreprint
In one paragraph

Article in ArXiv, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Duy Duong-TranDepartment of Biostatistics, Epidemiology, and Informatics (DBEI), Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Nghi NguyenGonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan, Israel.
Shizhuo MuDepartment of Biostatistics, Epidemiology, and Informatics (DBEI), Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Jiong ChenDepartment of Biostatistics, Epidemiology, and Informatics (DBEI), Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Jingxuan BaoDepartment of Biostatistics, Epidemiology, and Informatics (DBEI), Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Frederick XuDepartment of Biostatistics, Epidemiology, and Informatics (DBEI), Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Sumita GaraiDepartment of Biostatistics, Epidemiology, and Informatics (DBEI), Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Jose Cadena-PicoMachine Learning Group, Lawrence Livermore National Laboratory, Livermore, CA, USA.
Alan David KaplanComputational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA, USA.
Tianlong ChenDepartment of Computer Science, The University of North Carolina at Chapel Hill.
Yize ZhaoSchool of Public Health, Yale University, New Heaven, CT, USA.
Li ShenDepartment of Biostatistics, Epidemiology, and Informatics (DBEI), Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Joaquín GoñiSchool of Industrial Engineering, Purdue University, West Lafayette, IN, USA.

Funding

Mapping the Human Connectome: Structure, Function, and HeritabilityU54MH091657 · NIMH · WASHINGTON UNIVERSITY · PI UGURBIL, KAMIL, VAN ESSEN, DAVID C · 2010 to 2014
$34.7M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
Ultrascale Machine Learning to Empower Discovery in Alzheimers Disease BiobanksU01AG068057 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Christos Davatzikos, Heng Huang · 2020 to 2026
$20.7M
Translational big data analytic approaches to advance drug repurposing for Alzheimer's diseaseR01AG071470 · NIA · UNIVERSITY OF PENNSYLVANIA · PI KIM, DOKYOON, NING, XIA · 2021 to 2025
$3.8M
Statistical models for multi-modal brain imaging studies of HIV-associated cognitive declineR01MH108467 · NIMH · INDIANA UNIVERSITY INDIANAPOLIS · PI HAREZLAK, JAROSLAW · 2015 to 2019
$2.0M
Integrative Bioinformatics Approaches to Human Brain Genomics and ConnectomicsR01EB022574 · NIBIB · UNIVERSITY OF PENNSYLVANIA · PI SHEN, LI · 2016 to 2019
$1.9M
Novel integrative imaging genetics analysis for Alzheimer's disease riskand progressionRF1AG068191 · NIA · YALE UNIVERSITY · PI ZHAO, YIZE · 2021 to 2021
$1.9M
Cross-disciplinary training in translational neuroimaging of ADRDT32AG076411 · NIA · UNIVERSITY OF PENNSYLVANIA · PI JOHN A DETRE, MURRAY GROSSMAN · 2022 to 2026
$1.5M
NCATS NIH HHS UL1 TR001108NIA NIH HHS R01 AG071470NIA NIH HHS RF1 AG068191NIA NIH HHS T32 AG076411NIA NIH HHS U01 AG068057NIBIB NIH HHS R01 EB022574NIMH NIH HHS R01 MH108467NIMH NIH HHS U54 MH091657
6 · The paper itself

Abstract

In systems and network neuroscience, many common practices in brain connectomic analysis are often not properly scrutinized. One such practice is mapping a predetermined set of sub-circuits, like functional networks (FNs), onto subjects' functional connectomes (FCs) without adequately assessing the information-theoretic appropriateness of the partition. Another practice that goes unchallenged is thresholding weighted FCs to remove spurious connections without justifying the chosen threshold. This paper leverages recent theoretical advances in Stochastic Block Models (SBMs) to formally define and quantify the information-theoretic fitness (e.g., prominence) of a predetermined set of FNs when mapped to individual FCs under different fMRI task conditions. Our framework allows for evaluating any combination of FC granularity, FN partition, and thresholding strategy, thereby optimizing these choices to preserve important topological features of the human brain connectomes. By applying to the Human Connectome Project with Schaefer parcellations at multiple levels of granularity, the framework showed that the common thresholding value of 0.25 was indeed information-theoretically valid for group-average FCs despite its previous lack of justification. Our results pave the way for the proper use of FNs and thresholding methods and provide insights for future research in individualized parcellations.

Identifiers

PMID38979488
PMCPMC11230349

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.