Evidence map›Paper›PMID 38979380›Full record

ArticlebioRxiv : the preprint server for biology2024

De Novo Design of Integrin α5β1 Modulating Proteins for Regenerative Medicine.

Xinru Wang, Jordi Guillem-Marti, Saurav Kumar, David S Lee, Daniel Cabrerizo-Aguado, Rachel Werther, Kevin Alexander Estrada Alamo, Yan Ting Zhao, Adam Nguyen, Irina Kopyeva and 16 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors.

Xinru WangDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-5994-707X
Jordi Guillem-MartiBiomaterials, Biomechanics and Tissue Engineering Group, Department of Materials Science and Engineering, Universitat Politècnica de Catalunya - BarcelonaTech (UPC), Barcelona, Spain.ORCID 0000-0003-0307-2221
Saurav KumarDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-0992-589X
David S LeeDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-6539-4272
Daniel Cabrerizo-AguadoBiomaterials, Biomechanics and Tissue Engineering Group, Department of Materials Science and Engineering, Universitat Politècnica de Catalunya - BarcelonaTech (UPC), Barcelona, Spain.
Rachel WertherDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-3058-1550
Kevin Alexander Estrada AlamoDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-3829-357X
Yan Ting ZhaoDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-9230-7066
Adam NguyenDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-2030-2861
Irina KopyevaDepartment of Bioengineering, University of Washington, Seattle, WA, USA.
Buwei HuangDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-0762-7178
Jing LiProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.
Yuxin HaoProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.
Xinting LiDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-5559-7578
Aritza Brizuela-VelascoDENS-ia Research Group, Faculty of Health Sciences, Miguel de Cervantes European University, Valladolid, Spain.ORCID 0000-0001-6421-3863
Analisa MurrayDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Stacey GerbenDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Anindya RoyDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-9766-4326
Cole A DeForestInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0003-0337-3577
Timothy SpringerProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.ORCID 0000-0001-6627-2904
Hannele Ruohola-BakerOral Health Sciences, School of Dentistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-5588-4531
Jonathan A CooperDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-8626-7827
Melody G CampbellDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0003-1909-5751
Jose Maria ManeroBiomaterials, Biomechanics and Tissue Engineering Group, Department of Materials Science and Engineering, Universitat Politècnica de Catalunya - BarcelonaTech (UPC), Barcelona, Spain.ORCID 0000-0002-1673-4389
Maria-Pau GinebraBiomaterials, Biomechanics and Tissue Engineering Group, Department of Materials Science and Engineering, Universitat Politècnica de Catalunya - BarcelonaTech (UPC), Barcelona, Spain.ORCID 0000-0002-4700-5621
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7896-6217

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
Interdisciplinary Tranining in Cancer ResearchT32CA080416 · NCI · UNIVERSITY OF WASHINGTON · PI STODDARD, BARRY L. · 1998 to 2023
$9.7M
Comprehensive Training in Inter-Disciplinary Oral Health ResearchT90DE021984 · NIDCR · UNIVERSITY OF WASHINGTON · PI Robert Aaron Cornell · 2012 to 2026
$7.9M
Structures and Conformational Equilibria of Integrin alpha5 beta1R01HL131729 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI SPRINGER, TIMOTHY A · 2016 to 2024
$4.7M
Regulation of cell migration and signaling by phosphotyrosine and ubiquitinR01GM109463 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI COOPER, JONATHAN A · 2014 to 2022
$3.0M
Mimicking, Exploiting, and Understanding Biology's Heterogeneity in 4DR35GM138036 · NIGMS · UNIVERSITY OF WASHINGTON · PI Cole A DeForest · 2020 to 2026
$2.3M
The Molecular Basis for Integrin-Mediated Bidirectional SignalingR35GM147414 · NIGMS · FRED HUTCHINSON CANCER CENTER · PI Melody G Campbell · 2022 to 2026
$2.2M
NCI NIH HHS P30 CA015704NCI NIH HHS T32 CA080416NHLBI NIH HHS R01 HL131729NIDCR NIH HHS T90 DE021984NIGMS NIH HHS R01 GM109463NIGMS NIH HHS R35 GM138036NIGMS NIH HHS R35 GM147414
6 · The paper itself

Abstract

Integrin α5β1 is crucial for cell attachment and migration in development and tissue regeneration, and α5β1 binding proteins could have considerable utility in regenerative medicine and next-generation therapeutics. We use computational protein design to create de novo α5β1-specific modulating miniprotein binders, called NeoNectins, that bind to and stabilize the open state of α5β1. When immobilized onto titanium surfaces and throughout 3D hydrogels, the NeoNectins outperform native fibronectin and RGD peptide in enhancing cell attachment and spreading, and NeoNectin-grafted titanium implants outperformed fibronectin and RGD-grafted implants in animal models in promoting tissue integration and bone growth. NeoNectins should be broadly applicable for tissue engineering and biomedicine.

Indexed as

biomaterialDe novo protein designhydrogelintegrin α5β1regenerative medicineRGDtitanium

Identifiers

PMID38979380
PMCPMC11230231

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.