Evidence map›Paper›PMID 38979244›Full record

ArticlebioRxiv : the preprint server for biology2024

Multiscale regulation of nutrient stress responses in

Alyssa M Ekdahl, Tatiana Julien, Sahana Suraj, Judith Kribelbauer, Saeed Tavazoie, P Lydia Freddolino, Lydia M Contreras

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Alyssa M EkdahlMcKetta Department of Chemical Engineering, University of Texas at Austin, Austin, TX 78712, USA.ORCID 0000-0003-0683-9336
Tatiana JulienDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, 78712, USA.
Sahana SurajMcKetta Department of Chemical Engineering, University of Texas at Austin, Austin, TX 78712, USA.
Judith KribelbauerDepartment of Systems Biology, Columbia University, New York, NY, 10032, USA.ORCID 0000-0002-8072-7773
Saeed TavazoieDepartment of Systems Biology, Columbia University, New York, NY, 10032, USA.ORCID 0000-0003-2183-4162
P Lydia FreddolinoDepartment of Biological Chemistry and Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.ORCID 0000-0002-5821-4226
Lydia M ContrerasMcKetta Department of Chemical Engineering, University of Texas at Austin, Austin, TX 78712, USA.ORCID 0000-0001-5010-5511

Funding

Systems biological interrogation of bacterial persistenceR01AI077562 · NIAID · PRINCETON UNIVERSITY · PI TAVAZOIE, SAEED F · 2010 to 2024
$6.4M
Building a unified framework for understanding bacterial gene regulation and chromosomal architectureR35GM128637 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Lydia Petra Freddolino · 2018 to 2026
$3.6M
Novel mechanisms of posttranscriptional regulation by CsrAR01GM135495 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI CONTRERAS, LYDIA MARIA · 2020 to 2024
$1.8M
NIAID NIH HHS R01 AI077562NIGMS NIH HHS R01 GM135495NIGMS NIH HHS R35 GM128637
6 · The paper itself

Abstract

Recent research has indicated the presence of heterochromatin-like regions of extended protein occupancy and transcriptional silencing of bacterial genomes. We utilized an integrative approach to track chromatin structure and transcription in

Identifiers

PMID38979244
PMCPMC11230228

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.