Evidence map›Paper›PMID 38979140›Full record

ArticlebioRxiv : the preprint server for biology2024

Colony context and size-dependent compensation mechanisms give rise to variations in nuclear growth trajectories.

Julie C Dixon, Christopher L Frick, Chantelle L Leveille, Philip Garrison, Peyton A Lee, Saurabh S Mogre, Benjamin Morris, Nivedita Nivedita, Ritvik Vasan, Jianxu Chen and 15 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors.

Julie C DixonAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0000-0001-9829-194X
Christopher L FrickAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0000-0001-6823-5920
Chantelle L LeveilleAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0000-0002-9486-7304
Philip GarrisonAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.
Peyton A LeeAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0009-0000-9453-8917
Saurabh S MogreAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0000-0002-3781-5161
Benjamin MorrisAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0009-0001-7670-0797
Nivedita NiveditaAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.
Ritvik VasanAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.
Jianxu ChenAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0000-0002-8500-1357
Cameron L FraserAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.
Clare R GamlinAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0000-0002-5975-7003
Leigh K HarrisAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.
Melissa C HendershottAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.
Graham T JohnsonAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0000-0002-1259-8762
Kyle N KleinAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0000-0002-7713-2787
Sandra A OluochAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.
Derek J ThirstrupAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0000-0002-2702-2010
M Filip SluzewskiAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.
Lyndsay WilhelmAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.
Ruian YangAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.
Daniel M ToloudisAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0000-0003-2620-1233
Matheus P VianaAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.
Julie A TheriotDepartment of Biology and Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-2334-2535
Susanne M RafelskiAllen Institute for Cell Science, 615 Westlake Ave N, Seattle, WA, 98109, USA.ORCID 0000-0002-1399-5970

Funding

Multiscale Analyses of 4D Nucleome Structure and Function by Comprehensive Multimodal Data IntegrationUM1HG011593 · NHGRI · CARNEGIE-MELLON UNIVERSITY · PI ALBER, FRANK, BELMONT, ANDREW STEVEN · 2020 to 2024
$10.4M
NHGRI NIH HHS UM1 HG011593
6 · The paper itself

Abstract

To investigate the fundamental question of how cellular variations arise across spatiotemporal scales in a population of identical healthy cells, we focused on nuclear growth in hiPS cell colonies as a model system. We generated a 3D timelapse dataset of thousands of nuclei over multiple days, and developed open-source tools for image and data analysis and an interactive timelapse viewer for exploring quantitative features of nuclear size and shape. We performed a data-driven analysis of nuclear growth variations across timescales. We found that individual nuclear volume growth trajectories arise from short timescale variations attributable to their spatiotemporal context within the colony. We identified a strikingly time-invariant volume compensation relationship between nuclear growth duration and starting volume across the population. Notably, we discovered that inheritance plays a crucial role in determining these two key nuclear growth features while other growth features are determined by their spatiotemporal context and are not inherited.

Identifiers

PMID38979140
PMCPMC11230432

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.