Evidence map›Paper›PMID 38978580›Full record

ArticleResearch square2024

Kataegis associated mutational processes linked to adverse prostate cancer presentation in African men.

Vanessa Hayes, Jue Jiang, Avraam Tapinos, Ruotian Huang, Riana Bornman, Phillip Stricker, Shingai Mutambirwa, David Wedge, Weerachai Jaratlerdsiri

Abstract readPreprint
In one paragraph

Article in Research square, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Vanessa HayesUniversity of Sydney.ORCID 0000-0002-4524-7280
Jue JiangGarvan Institute of Medical Research.ORCID 0000-0003-0920-8310
Avraam TapinosUniversity of Manchester.
Ruotian HuangUniversity of Sydney.
Riana BornmanUniversity of Pretoria.ORCID 0000-0003-3975-2333
Phillip StrickerSt. Vincent's Hospital.ORCID 0000-0002-0934-0656
Shingai MutambirwaSefako Makgatho Health Science University.
David WedgeUniversity of Manchester.ORCID 0000-0002-7572-3196
Weerachai JaratlerdsiriUniversity of Sydney.ORCID 0000-0001-9100-1807

Funding

Genomic bases for African geo-ethnic prostate cancer health disparityR01CA285772 · NCI · UNIVERSITY OF SYDNEY · PI Vanessa Marie Hayes · 2024 to 2026
$1.5M
NCI NIH HHS R01 CA285772
6 · The paper itself

Abstract

Kataegis, the focal hypermutation of single base substitutions (SBS) in tumour genomes, has received little attention with respect to prostate cancer (PCa) associated molecular and clinical features. Most notably, data is lacking with regards to this tumour evolutionary phenomenon and PCa racial disparities, with African men disproportionately impacted. Here through comparison between African (n = 109) and non-African (n = 79) whole genome sequenced treatment naïve primary tumours, using a single analytical workflow we assessed for shared and unique features of kataegis. Linking kataegis to aggressive presentation, structural variant burden and copy number loss, we attributed APOBEC3 activity through higher rates of SBS2 to high-risk African tumours. While kataegis positive African patients presented with elevated prostate specific antigen levels, their tumours showed evolutionary unique trajectories marked by increased subclonal and structural variant-independent kataegis. The potential to exacerbate tumour heterogeneity emphases the significance of continued exploration of biological behaviours and environmental exposures for African patients.

Identifiers

PMID38978580
PMCPMC11230510

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.