Evidence map›Paper›PMID 38978012›Full record

ArticleBMC microbiology2024

Genomic characterization of multi drug resistant ESBL-producing Escherichia coli isolates from patients and patient environments in a teaching hospital in Ghana.

Esther Eyram Asare Yeboah, Nicholas Agyepong, Joshua Mbanga, Daniel Gyamfi Amoako, Akebe Luther King Abia, Arshad Ismail, Alexander Owusu-Ofori, Sabiha Yusuf Essack

Abstract read
In one paragraph

Article in BMC microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Genomic landscape ofApplied and environmental microbiology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Genomic insights into extended-spectrumJournal of medical microbiology · 2025
    Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Esther Eyram Asare YeboahAntimicrobial Research Unit, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa. esteyram@gmail.com.
Nicholas AgyepongDepartment of Pharmaceutical Sciences, Sunyani Technical University, Sunyani, Ghana.
Joshua MbangaAntimicrobial Research Unit, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa.
Daniel Gyamfi AmoakoAntimicrobial Research Unit, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa.
Akebe Luther King AbiaAntimicrobial Research Unit, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa.
Arshad IsmailSequencing Core Facility, National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, 2131, South Africa.
Alexander Owusu-OforiDepartment of Clinical Microbiology, School of Medicine and Dentistry, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
Sabiha Yusuf EssackAntimicrobial Research Unit, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundESBL-producing Escherichia coli pose a growing health risk in community and healthcare settings. We investigated the resistome, virulome, mobilome, and genetic relatedness of multidrug-resistant (MDR) E. coli isolates from patients and their environment in a Ghanaian teaching hospital. MATERIALS AND

methodsTwenty-three MDR ESBL-producing or carbapenem-resistant E. coli isolates from a collection of MDR Gram-negative bacteria (GNB) from patients and environments were selected for genomic analyses. Whole genome sequencing and bioinformatics tools were used to analyze genomic characteristics and phylogeny.

resultsThe prevalence and incidence of rectal carriage of ESBL E. coli among patients were 13.65% and 11.32% respectively. The β-lactamase genes, bla

conclusionWe identified ESBL-producing E. coli with diverse genomic characteristics circulating in different hospital directorates. Clonal relatedness was observed among isolates from patients and the environment, as well as between different patients, suggesting transmission within and between sources.

Indexed as

Anti-Bacterial Agentsbeta-LactamasesDrug Resistance, Multiple, BacterialEscherichia coliEscherichia coli InfectionsHospitals, TeachingPhylogenyAdultFemaleGenome, BacterialGenomicsGhanaHumansMaleMicrobial Sensitivity TestsPlasmidsAnti-Bacterial Agentsbeta-LactamasesVirulence FactorsEscherichia coliExtended spectrum β-lactamaseGenomicsMobile genetic elementsPhylogeny

Identifiers

PMID38978012
PMCPMC11229298

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.