Evidence map›Paper›PMID 38977906›Full record

ArticleNature microbiology2024

Multikingdom and functional gut microbiota markers for autism spectrum disorder.

Qi Su, Oscar W H Wong, Wenqi Lu, Yating Wan, Lin Zhang, Wenye Xu, Moses K T Li, Chengyu Liu, Chun Pan Cheung, Jessica Y L Ching and 6 more

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

  1. Trial
  2. Article
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  5. Article
  6. The Unique Roles of Executive Function in Co-Occurring Psychopathologies in Autism.Autism research : official journal of the International Society for Autism Research · 2026
    Article
  7. Review
  8. The Microbiota in the Diagnosis and Treatment of Autism Spectrum Disorder.International journal of molecular sciences · 2026
    Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Qi Su *Microbiota I-Center (MagIC), Hong Kong SAR, China.ORCID http://orcid.org/0000-0001-9100-387X
Oscar W H Wong *Department of Psychiatry, The Chinese University of Hong Kong, Hong Kong SAR, China.
Wenqi LuMicrobiota I-Center (MagIC), Hong Kong SAR, China.
Yating WanMicrobiota I-Center (MagIC), Hong Kong SAR, China.
Lin ZhangMicrobiota I-Center (MagIC), Hong Kong SAR, China.ORCID http://orcid.org/0000-0003-1634-3780
Wenye XuMicrobiota I-Center (MagIC), Hong Kong SAR, China.
Moses K T LiMicrobiota I-Center (MagIC), Hong Kong SAR, China.
Chengyu LiuMicrobiota I-Center (MagIC), Hong Kong SAR, China.
Chun Pan CheungMicrobiota I-Center (MagIC), Hong Kong SAR, China.
Jessica Y L ChingMicrobiota I-Center (MagIC), Hong Kong SAR, China.
Pui Kuan CheongMicrobiota I-Center (MagIC), Hong Kong SAR, China.
Ting Fan LeungThe D.H. Chen Foundation Hub of Advanced Technology for Child Health (HATCH), The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0002-6469-1926
Sandra ChanDepartment of Psychiatry, The Chinese University of Hong Kong, Hong Kong SAR, China.
Patrick LeungThe D.H. Chen Foundation Hub of Advanced Technology for Child Health (HATCH), The Chinese University of Hong Kong, Hong Kong SAR, China.
Francis K L ChanMicrobiota I-Center (MagIC), Hong Kong SAR, China.
Siew C NgMicrobiota I-Center (MagIC), Hong Kong SAR, China. siewchienng@cuhk.edu.hk.ORCID http://orcid.org/0000-0002-6850-4454

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Associations between the gut microbiome and autism spectrum disorder (ASD) have been investigated although most studies have focused on the bacterial component of the microbiome. Whether gut archaea, fungi and viruses, or function of the gut microbiome, is altered in ASD is unclear. Here we performed metagenomic sequencing on faecal samples from 1,627 children (aged 1-13 years, 24.4% female) with or without ASD, with extensive phenotype data. Integrated analyses revealed that 14 archaea, 51 bacteria, 7 fungi, 18 viruses, 27 microbial genes and 12 metabolic pathways were altered in children with ASD. Machine learning using single-kingdom panels showed area under the curve (AUC) of 0.68 to 0.87 in differentiating children with ASD from those that are neurotypical. A panel of 31 multikingdom and functional markers showed a superior diagnostic accuracy with an AUC of 0.91, with comparable performance for males and females. Accuracy of the model was predominantly driven by the biosynthesis pathways of ubiquinol-7 or thiamine diphosphate, which were less abundant in children with ASD. Collectively, our findings highlight the potential application of multikingdom and functional gut microbiota markers as non-invasive diagnostic tools in ASD.

Indexed as

Autism Spectrum DisorderBacteriaBiomarkersFecesGastrointestinal MicrobiomeAdolescentArchaeaChildChild, PreschoolFemaleFungiHumansInfantMachine LearningMaleMetagenomeBiomarkers

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.