Evidence map›Paper›PMID 38977690›Full record

ArticleNature communications2024

SPRING licenses S1P-mediated cleavage of SREBP2 by displacing an inhibitory pro-domain.

Sebastian Hendrix, Vincent Dartigue, Hailee Hall, Shrankhla Bawaria, Jenina Kingma, Bilkish Bajaj, Noam Zelcer, Daniel L Kober

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Structural basis for substrate selectivity by site-one protease revealed by studies with a small-molecule inhibitor.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sebastian HendrixDepartment of Medical Biochemistry, Amsterdam UMC, Amsterdam Cardiovascular Sciences and Gastroenterology and Metabolism, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, the Netherlands.ORCID 0000-0003-2055-9883
Vincent DartigueDepartment of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID 0009-0009-5146-0596
Hailee HallDepartment of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Shrankhla BawariaDepartment of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID 0000-0002-0785-3044
Jenina KingmaDepartment of Medical Biochemistry, Amsterdam UMC, Amsterdam Cardiovascular Sciences and Gastroenterology and Metabolism, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, the Netherlands.ORCID 0000-0003-2822-5415
Bilkish BajajDepartment of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Noam ZelcerDepartment of Medical Biochemistry, Amsterdam UMC, Amsterdam Cardiovascular Sciences and Gastroenterology and Metabolism, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, the Netherlands. n.zelcer@amsterdamumc.nl.ORCID 0000-0001-6935-7532
Daniel L KoberDepartment of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA. daniel.kober@utsouthwestern.edu.ORCID 0000-0001-8657-9348

Funding

UT Southwestern NORCP30DK127984 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI Jeff G McDonald · 2022 to 2026
$7.4M
Structural and mechanistic basis for the maturation of site-one protease in the secretory pathwayR01GM155152 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Daniel Luke Kober · 2024 to 2026
$1.0M
The mechanistic basis for targeted protein degradation in lipid metabolismR00GM141261 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI KOBER, DANIEL LUKE · 2023 to 2025
$747k
Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) M.22.034; GENESISNederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) NWO; 016.176.643NIDDK NIH HHS P30 DK127984NIGMS NIH HHS R00 GM141261NIGMS NIH HHS R01 GM155152U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R00GM141261
6 · The paper itself

Abstract

Site-one protease (S1P) conducts the first of two cleavage events in the Golgi to activate Sterol regulatory element binding proteins (SREBPs) and upregulate lipogenic transcription. S1P is also required for a wide array of additional signaling pathways. A zymogen serine protease, S1P matures through autoproteolysis of two pro-domains, with one cleavage event in the endoplasmic reticulum (ER) and the other in the Golgi. We recently identified the SREBP regulating gene, (SPRING), which enhances S1P maturation and is necessary for SREBP signaling. Here, we report the cryo-EM structures of S1P and S1P-SPRING at sub-2.5 Å resolution. SPRING activates S1P by dislodging its inhibitory pro-domain and stabilizing intra-domain contacts. Functionally, SPRING licenses S1P to cleave its cognate substrate, SREBP2. Our findings reveal an activation mechanism for S1P and provide insights into how spatial control of S1P activity underpins cholesterol homeostasis.

Indexed as

Protein DomainsSterol Regulatory Element Binding Protein 2AnimalsCholesterolCryoelectron MicroscopyEndoplasmic ReticulumGolgi ApparatusHEK293 CellsHumansProprotein ConvertasesSerine EndopeptidasesSignal TransductionCholesterolmembrane-bound transcription factor peptidase, site 1Proprotein ConvertasesSerine EndopeptidasesSREBF2 protein, humanSterol Regulatory Element Binding Protein 2

Identifiers

PMID38977690
PMCPMC11231238

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.