ArticleFrontiers in genetics2024
Phylogenomic analysis and molecular identification of true fruit flies.
Article in Frontiers in genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
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Who cites it
3 citing papers in PubMed.
- Characterization of the Complete Mitogenomes of Four Dacinae Species (Diptera: Tephritidae) with Phylogenetic Analysis.Animals : an open access journal from MDPI · 2025Article
- Odorant-binding proteins (OBPs) in Ceratitis capitata Wiedemann (Diptera: Tephritidae): integrative analysis of a multigene family.Journal of insect science (Online) · 2025Article
- Identifying sets of phylogenetically informative markers for Anastrepha (Diptera: Tephritidae).Scientific reports · 2025Article
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Authors and funding
6 authors.
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Abstract
The family Tephritidae in the order Diptera, known as true fruit flies, are agriculturally important insect pests. However, the phylogenetic relationships of true fruit flies, remain controversial. Moreover, rapid identification of important invasive true fruit flies is essential for plant quarantine but is still challenging. To this end, we sequenced the genome of 16 true fruit fly species at coverage of 47-228×. Together with the previously reported genomes of nine species, we reconstructed phylogenetic trees of the Tephritidae using benchmarking universal single-copy ortholog (BUSCO), ultraconserved element (UCE) and anchored hybrid enrichment (AHE) gene sets, respectively. The resulting trees of 50% taxon-occupancy dataset for each marker type were generally congruent at 88% nodes for both concatenation and coalescent analyses. At the subfamily level, both Dacinae and Trypetinae are monophyletic. At the species level,
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