Evidence map›Paper›PMID 38974008›Full record

ArticleData in brief2024

Dataset of DNA methylation profiles of 189 pediatric central nervous system, soft tissue, and bone tumors.

Robin Jugas, Petra Pokorna, Sona Adamcova, Katerina Kozelkova, Dana Knoflickova, Hana Palova, Jaroslav Sterba, Ondrej Slaby

Abstract read
In one paragraph

Article in Data in brief, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Robin JugasDepartment of Biology, Faculty of Medicine and Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czechia.
Petra PokornaDepartment of Biology, Faculty of Medicine and Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czechia.
Sona AdamcovaDepartment of Biology, Faculty of Medicine and Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czechia.
Katerina KozelkovaDepartment of Biology, Faculty of Medicine and Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czechia.
Dana KnoflickovaDepartment of Biology, Faculty of Medicine and Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czechia.
Hana PalovaDepartment of Biology, Faculty of Medicine and Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czechia.
Jaroslav SterbaDepartment of Pediatric Oncology, University Hospital Brno and Faculty of Medicine, Masaryk University, Jihlavská 20, 625 00 Brno, Czechia.
Ondrej SlabyDepartment of Biology, Faculty of Medicine and Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czechia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alterations in DNA methylation profiles belong to important mechanisms in cancer development, and their assessment can be utilized for rapid and precise diagnostics. Therefore, establishing datasets of methylation profiles can improve and deepen our understanding of the role of epigenetic changes in cancer development as well as improve our diagnostic capabilities. In this dataset, we generated NGS data for 189 samples of pediatric CNS, soft tissue, and bone tumors. The sequencing libraries were prepared using methyl capture bisulfite sequencing, an effective compromise between whole-genome bisulfite sequencing and array-based methods with a more limited scope of target regions. The larger part of the cohort was processed with the Agilent SureSelectXT Human Methyl-Seq kit (149 samples) and the rest with the Illumina TruSeq Methyl Capture EPIC Library Prep Kit (40 samples). The data presented in this article may help other researchers further elucidate the importance of methylation in diagnosing pediatric CNS tumors, soft tissue, and bone tumors.

Indexed as

EpigeneticsPediatric oncologyPrecision medicineTargeted methylation sequencing

Identifiers

PMID38974008
PMCPMC11226799

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.