Evidence map›Paper›PMID 38973835›Full record

ArticleACS omega2024

Predictions of Colloidal Molecular Aggregation Using AI/ML Models.

David C Kombo, J David Stepp, Sungtaek Lim, Bettina Elshorst, Yi Li, Laura Cato, Maysoun Shomali, David Fink, Matthew J LaMarche

Abstract read
In one paragraph

Article in ACS omega, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

David C KomboIntegrated Drug Discovery, Sanofi, 350 Water St., Cambridge, Massachusetts 02141, United States.ORCID https://orcid.org/0009-0002-7746-0358
J David SteppIntegrated Drug Discovery, Sanofi, 350 Water St., Cambridge, Massachusetts 02141, United States.
Sungtaek LimIntegrated Drug Discovery, Sanofi, 350 Water St., Cambridge, Massachusetts 02141, United States.
Bettina ElshorstCMC Synthetics Early Development Analytics, Sanofi, Industriepark Hochst, Frankfurt 65926, Germany.
Yi LiIntegrated Drug Discovery, Sanofi, 350 Water St., Cambridge, Massachusetts 02141, United States.
Laura CatoMolecular Oncology, Sanofi, 350 Water St., Cambridge, Massachusetts 02141, United States.
Maysoun ShomaliMolecular Oncology, Sanofi, 350 Water St., Cambridge, Massachusetts 02141, United States.
David FinkIntegrated Drug Discovery, Sanofi, 350 Water St., Cambridge, Massachusetts 02141, United States.
Matthew J LaMarcheIntegrated Drug Discovery, Sanofi, 350 Water St., Cambridge, Massachusetts 02141, United States.ORCID https://orcid.org/0000-0002-6588-2302

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To facilitate the triage of hits from small molecule screens, we have used various AI/ML techniques and experimentally observed data sets to build models aimed at predicting colloidal aggregation of small organic molecules in aqueous solution. We have found that Naïve Bayesian and deep neural networks outperform logistic regression, recursive partitioning tree, support vector machine, and random forest techniques by having the lowest balanced error rate (BER) for the test set. Derived predictive classification models consistently and successfully discriminated aggregator molecules from nonaggregator hits. An analysis of molecular descriptors in favor of colloidal aggregation confirms previous observations (hydrophobicity, molecular weight, and solubility) in addition to undescribed molecular descriptors such as the fraction of sp

Identifiers

PMID38973835
PMCPMC11223200

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.