Evidence map›Paper›PMID 38973477›Full record

ArticleJournal of cellular and molecular medicine2024

Deciphering the role of cuproptosis-related lncRNAs in shaping the lung cancer immune microenvironment: A comprehensive prognostic model.

Hai Huang, Guoxi Chen, Zongqi Zhang, Gang Wu, Zhengbin Zhang, Aiping Yu, Jianjie Wang, Chao Quan, Yuehua Li, Meilan Zhou

Abstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Hai HuangTuberculosis ward No.2, Wuhan Pulmonary Hospital, Wuhan Institute for Tuberculosis Control, Wuhan, Hubei, China.
Guoxi ChenTuberculosis ward No.2, Wuhan Pulmonary Hospital, Wuhan Institute for Tuberculosis Control, Wuhan, Hubei, China.
Zongqi ZhangTuberculosis ward No.2, Wuhan Pulmonary Hospital, Wuhan Institute for Tuberculosis Control, Wuhan, Hubei, China.
Gang WuDepartment of Tuberculosis control, Wuhan Pulmonary Hospital, Wuhan Institute for Tuberculosis Control, Affiliated to Jianghan University, Wuhan, Hubei, China.
Zhengbin ZhangDepartment of Tuberculosis control, Wuhan Pulmonary Hospital, Wuhan Institute for Tuberculosis Control, Affiliated to Jianghan University, Wuhan, Hubei, China.
Aiping YuInfectious disease prevention and control department, Dongxihu Centers for Disease Prevention and Control, Wuhan, Hubei, China.
Jianjie WangDepartment of Tuberculosis control, Wuhan Pulmonary Hospital, Wuhan Institute for Tuberculosis Control, Affiliated to Jianghan University, Wuhan, Hubei, China.
Chao QuanDepartment of Tuberculosis control, Wuhan Pulmonary Hospital, Wuhan Institute for Tuberculosis Control, Affiliated to Jianghan University, Wuhan, Hubei, China.
Yuehua LiDepartment of Tuberculosis control, Wuhan Pulmonary Hospital, Wuhan Institute for Tuberculosis Control, Affiliated to Jianghan University, Wuhan, Hubei, China.
Meilan ZhouWuhan Pulmonary Hospital, Wuhan Institute for Tuberculosis Control, Affiliated to Jianghan University, Wuhan, Hubei, China.

Funding

Hubei Province Health and Family Planning Scientific Research Project WJ2023F054Hubei Provincial Natural Science Foundation Research Project 2022CFB176Scientific Research Projects from Wuhan Municipal Health Commission WX23B39
6 · The paper itself

Abstract

Cuproptosis plays an important role in cancer, but its role in lung cancer remains unknown. Transcriptional profiles, clinical details and mutation data were acquired from the Cancer Genome Atlas database through a variety of methods. The analysis of this publicly available data was comprehensively performed using R software along with its relevant packages, ensuring a thorough examination of the information. In this study, we conducted a detailed analysis of cuproptosis-related genes and lncRNA co-expression, identifying 129 relevant lncRNAs and establishing a prognostic model with four key lncRNAs (LINC00996, RPARP-AS1, SND1-IT1, TMPO-AS1). Utilizing data from TCGA and GEO databases, the model effectively categorized patients into high- and low-risk groups, showing significant survival differences. Correlation analysis highlighted specific relationships between individual lncRNAs and cuproptosis genes. Our survival analysis indicated a higher survival rate in the low-risk group across various cohorts. Additionally, the model's predictive accuracy was confirmed through independent prognostic analysis and ROC curve evaluations. Functional enrichment analysis revealed distinct biological pathways and immune functions between risk groups. Tumour mutation load analysis differentiated high- and low-risk groups by their mutation profiles. Drug sensitivity analysis and immune infiltration studies using the CIBERSORT algorithm further elucidated the potential treatment responses in different risk groups. This comprehensive evaluation underscores the significance of lncRNAs in cuproptosis and their potential as biomarkers for lung cancer prognosis and immune microenvironment.

Indexed as

Biomarkers, TumorGene Expression Regulation, NeoplasticLung NeoplasmsRNA, Long NoncodingTumor MicroenvironmentDatabases, GeneticGene Expression ProfilingHumansMutationPrognosisROC CurveBiomarkers, TumorRNA, Long NoncodingcuproptosisIncRNAlung cancer

Identifiers

PMID38973477
PMCPMC11228428

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.