ArticleBMC plant biology2024
Complete mitochondrial genome of Melia azedarach L., reveals two conformations generated by the repeat sequence mediated recombination.
Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed.
- TheGenes · 2026Article
- Assembly and characterization of the first complete mitochondrial genome of Epimedium sagittatum (Sieb. et Zucc.) Maxim (Berberidaceae):an invaluable traditional Chinese medicine.BMC plant biology · 2026Article
- Comparative analysis of mitochondrial genomes of Iris lactea reveals gene transfer and RNA-editing events.Molecular biology reports · 2026Article
- Mitochondrial genome assembly, comparative analysis of two caprifoliaceae species, and insights into adaptive evolution.BMC plant biology · 2026Article
- Evolutionary dynamics and phylogenetic analysis of the mitochondrial genome of the medicinal plant Peucedanum praeruptorum.BMC plant biology · 2026Article
- Newly assembled mitochondrial genomes ofFrontiers in plant science · 2026Article
- Mitochondrial genome assembly and analysis of Cercis chinensis: insights into an economically valuable ornamental species.BMC plant biology · 2025Article
- Sequencing of mitochondrial genome of Neolamarckia macrophylla uncovers divergent structure in genus Neolamarckia.BMC genomics · 2025Article
- Assembly and comparative analysis of chromosomal mitochondrial genomes in multiple Medicago species.BMC plant biology · 2025Article
- Evolutionary and functional insights into HSF gene family underpin thermal adaptation in the plateau plant Anisodus tanguticus.BMC plant biology · 2025Article
- Structural and phylogenetic comparisons of the complete mitochondrial genomes among taxa in genus Toona.Scientific reports · 2025Article
- The characterisation of the complete mitochondrial genome of Polygonatum Kingianum reveals recombination mediated by repeats associated with DNA replication.Scientific reports · 2025Article
- Assembly and comparative analysis of the complete mitochondrial genome of Lactuca sativa var. ramosa Hort.Scientific reports · 2025Article
- Assembly and comparative analysis of the complete mitochondrial genome of Echinacanthus longipes (Acanthaceae), endemic to the Sino-Vietnamese karst flora.BMC genomics · 2025Article
- De novo assembly of the mitochondrial genome of Glycyrrhiza glabra and identification of two types of homologous recombination configurations caused by repeat sequences.BMC genomics · 2025Article
- Assembly and comparative analysis of the first complete mitochondrial genome ofFrontiers in plant science · 2025Article
- Comparative analysis of chloroplast genomes inFrontiers in plant science · 2025Article
- Mitochondrial genome assembly and comparative analysis of decaploidFrontiers in plant science · 2025Article
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9 authors.
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Abstract
Melia azedarach is a species of enormous value of pharmaceutical industries. Although the chloroplast genome of M. azedarach has been explored, the information of mitochondrial genome (Mt genome) remains surprisingly limited. In this study, we used a hybrid assembly strategy of BGI short-reads and Nanopore long-reads to assemble the Mt genome of M. azedarach. The Mt genome of M. azedarach is characterized by two circular chromosomes with 350,142 bp and 290,387 bp in length, respectively, which encodes 35 protein-coding genes (PCGs), 23 tRNA genes, and 3 rRNA genes. A pair of direct repeats (R1 and R2) were associated with genome recombination, resulting in two conformations based on the Sanger sequencing and Oxford Nanopore sequencing. Comparative analysis identified 19 homologous fragments between Mt and chloroplast genome, with the longest fragment of 12,142 bp. The phylogenetic analysis based on PCGs were consist with the latest classification of the Angiosperm Phylogeny Group. Notably, a total of 356 potential RNA editing sites were predicted based on 35 PCGs, and the editing events lead to the formation of the stop codon in the rps10 gene and the start codons in the nad4L and atp9 genes, which were verified by PCR amplification and Sanger sequencing. Taken together, the exploration of M. azedarach gap-free Mt genome provides a new insight into the evolution research and complex mitogenome architecture.
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