Evidence map›Paper›PMID 38971865›Full record

ArticleScientific data2024

Pixel-wise segmentation of cells in digitized Pap smear images.

Balazs Harangi, Gergo Bogacsovics, Janos Toth, Ilona Kovacs, Erzsebet Dani, Andras Hajdu

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Balazs Harangi *Department of Data Science and Visualization, Faculty of Informatics, University of Debrecen, Debrecen, Hungary. harangi.balazs@inf.unideb.hu.ORCID 0000-0003-4405-2040
Gergo Bogacsovics *Department of Data Science and Visualization, Faculty of Informatics, University of Debrecen, Debrecen, Hungary.
Janos Toth *Department of Data Science and Visualization, Faculty of Informatics, University of Debrecen, Debrecen, Hungary.ORCID 0000-0003-1958-5144
Ilona Kovacs *Department of Pathology, Kenezy Gyula Hospital and Clinic, University of Debrecen, Debrecen, Hungary.
Erzsebet Dani *Department of Library and Information Science, Faculty of Humanities, University of Debrecen, Debrecen, Hungary.
Andras Hajdu *Department of Data Science and Visualization, Faculty of Informatics, University of Debrecen, Debrecen, Hungary.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A simple and cheap way to recognize cervical cancer is using light microscopic analysis of Pap smear images. Training artificial intelligence-based systems becomes possible in this domain, e.g., to follow the European recommendation to screen negative smears to reduce false negative cases. The first step for such a process is segmenting the cells. A large and manually segmented dataset is required for this task, which can be used to train deep learning-based solutions. We describe a corresponding dataset with accurate manual segmentations for the enclosed cells. Altogether, the APACS23 (Annotated PAp smear images for Cell Segmentation 2023) dataset contains about 37 000 manually segmented cells and is separated into dedicated training and test parts, which could be used for an official benchmark of scientific investigations or a grand challenge.

Indexed as

Papanicolaou TestUterine Cervical NeoplasmsDeep LearningFemaleHumansImage Processing, Computer-AssistedVaginal Smears

Identifiers

PMID38971865
PMCPMC11227563

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.